Replica exchange simulations of transient encounter complexes in protein-protein association. (Q36861690)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18728193 AND SRC:MED&resulttype=core&format=json

12 January 2020

title

Replica exchange simulations of transient encounter complexes in protein-protein association (English)

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12 January 2020

3

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12 January 2020

Gerhard Hummer

series ordinal

4

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12 January 2020

author name string

Young C Kim

series ordinal

1

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12 January 2020

Chun Tang

series ordinal

2

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12 January 2020

language of work or name

English

0 references

publication date

26 August 2008

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

12 January 2020

published in

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12 January 2020

volume

105

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12 January 2020

issue

35

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12 January 2020

page(s)

12855-12860

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Solution NMR Structures of Productive and Non-productive Complexes between the A and B Domains of the Cytoplasmic Subunit of the Mannose Transporter of the Escherichia coli Phosphotransferase System

12 January 2020

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The Vps27/Hse1 Complex Is a GAT Domain-Based Scaffold for Ubiquitin-Dependent Sorting

29 September 2017

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29 September 2017

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Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR

29 September 2017

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Energy landscape and transition state of protein-protein association

29 September 2017

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Visualization of transient encounter complexes in protein-protein association.

29 September 2017

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Protein complex formation by acetylcholinesterase and the neurotoxin fasciculin-2 appears to involve an induced-fit mechanism

29 September 2017

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NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA.

29 September 2017

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Detecting transient intermediates in macromolecular binding by paramagnetic NMR.

29 September 2017

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Effects of interface mutations on association modes and electron-transfer rates between proteins

29 September 2017

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Solution NMR structure of the 48-kDa IIAMannose-HPr complex of the Escherichia coli mannose phosphotransferase system

29 September 2017

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Transition state and encounter complex for fast association of cytochrome c2 with bacterial reaction center

29 September 2017

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Ensemble approach for NMR structure refinement against (1)H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecule

29 September 2017

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Protein topology determines binding mechanism

29 September 2017

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The origins of asymmetry in the folding transition states of protein L and protein G.

29 September 2017

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Solution structure of the phosphoryl transfer complex between the cytoplasmic A domain of the mannitol transporter IIMannitol and HPr of the Escherichia coli phosphotransferase system

29 September 2017

1 reference

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Electrostatic aspects of protein-protein interactions.

29 September 2017

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Solution structure of the 40,000 Mr phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr

29 September 2017

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Solution structure of the 30 kDa N-terminal domain of enzyme I of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system by multidimensional NMR

29 September 2017

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Electrostatic rate enhancement and transient complex of protein-protein association

29 September 2017

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Brownian dynamics of cytochrome c and cytochrome c peroxidase association

27 June 2018

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Visualization of transient ultra-weak protein self-association in solution using paramagnetic relaxation enhancement.

27 June 2018

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4 September 2018

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Diffusional encounter of barnase and barstar

4 September 2018

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An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes

4 September 2018

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Rational design of faster associating and tighter binding protein complexes.

4 September 2018

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Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar.

4 September 2018

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Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

4 September 2018

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Enhancement of Association Rates by Nonspecific Binding to DNA and Cell Membranes

4 September 2018

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Crossref

https://api.crossref.org/works/10.1073/PNAS.0802460105

Role of electrostatic interactions in transient encounter complexes in protein-protein association investigated by paramagnetic relaxation enhancement

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18728193

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Rapid, electrostatically assisted association of proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18728193

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0802460105

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18728193 AND SRC:MED&resulttype=core&format=json

12 January 2020

0 references

1 reference

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12 January 2020

PubMed publication ID

18728193

1 reference