Mammalian RNA polymerase II core promoters: insights from genome-wide studies (Q36814333)

16 August 2017

1 reference

title

Mammalian RNA polymerase II core promoters: insights from genome-wide studies (English)

1 reference

16 August 2017

Albin Sandelin

1

0 references

Boris Lenhard

Boris Lenhard

3

0 references

David A Hume

David A Hume

6

0 references

Piero Carninci

Piero Carninci

2

0 references

Yoshihide Hayashizaki

5

Yoshihide Hayashizaki

1 reference

16 August 2017

4

Jasmina Ponjavic

1 reference

16 August 2017

publication date

8 May 2007

1 reference

16 August 2017

published in

Nature Reviews Genetics

1 reference

16 August 2017

volume

8

1 reference

16 August 2017

issue

6

1 reference

16 August 2017

page(s)

424-436

1 reference

The RNA polymerase II core promoter

16 August 2017

cites work

1 reference

Core promoter-selective RNA polymerase II transcription.

31 March 2020

1 reference

The general transcription machinery and general cofactors

31 March 2020

1 reference

The mediator coactivator complex: functional and physical roles in transcriptional regulation

31 March 2020

1 reference

A mechanism for coordinating chromatin modification and preinitiation complex assembly.

31 March 2020

1 reference

Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors

31 March 2020

1 reference

Applied bioinformatics for the identification of regulatory elements

31 March 2020

1 reference

Promoter prediction analysis on the whole human genome.

31 March 2020

1 reference

Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells

31 March 2020

1 reference

A high-resolution map of active promoters in the human genome

31 March 2020

1 reference

Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome

31 March 2020

1 reference

Synergy of human Pol II core promoter elements revealed by statistical sequence analysis

31 March 2020

1 reference

Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction

31 March 2020

1 reference

Genome wide analysis of Arabidopsis core promoters

31 March 2020

1 reference

Promoter features related to tissue specificity as measured by Shannon entropy

31 March 2020

1 reference

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

31 March 2020

1 reference

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

31 March 2020

1 reference

DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays

31 March 2020

1 reference

Highly parallel genomic assays

31 March 2020

1 reference

Large-scale transcriptional activity in chromosomes 21 and 22

31 March 2020

1 reference

The transcriptional landscape of the mammalian genome

31 March 2020

1 reference

Tag-based approaches for transcriptome research and genome annotation

31 March 2020

1 reference

The transcriptional regulatory code of eukaryotic cells--insights from genome-wide analysis of chromatin organization and transcription factor binding

31 March 2020

1 reference

Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes

31 March 2020

1 reference

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia

31 March 2020

1 reference

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

31 March 2020

1 reference

CAGE: cap analysis of gene expression

31 March 2020

1 reference

5'-end SAGE for the analysis of transcriptional start sites

31 March 2020

1 reference

5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation

31 March 2020

1 reference

Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation

31 March 2020

1 reference

Transcription. Of chips and ChIPs

31 March 2020

1 reference

Use of chromatin immunoprecipitation assays in genome-wide location analysis of mammalian transcription factors

31 March 2020

1 reference

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

31 March 2020

1 reference

A global map of p53 transcription-factor binding sites in the human genome

31 March 2020

1 reference

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

31 March 2020

1 reference

Revolutions in rapid amplification of cDNA ends: new strategies for polymerase chain reaction cloning of full-length cDNA ends

31 March 2020

1 reference

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

31 March 2020

1 reference

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

31 March 2020

1 reference

The balance sheet for transcription: an analysis of nuclear RNA metabolism in mammalian cells

31 March 2020

1 reference

Functional human endogenous retroviral LTR transcription start sites are located between the R and U5 regions

31 March 2020

1 reference

GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats

31 March 2020

1 reference

The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter

31 March 2020

1 reference

31 March 2020

The multitasking genome

1 reference

Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sites

31 March 2020

1 reference

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters

31 March 2020

1 reference

Structure and mechanism of the RNA polymerase II transcription machinery

31 March 2020

1 reference

TATA box and initiator functions in the accurate transcription of a plant minimal promoter in vitro

31 March 2020

1 reference

Sequence and spacing of TATA box elements are critical for accurate initiation from the beta-phaseolin promoter

31 March 2020

1 reference

The initiator element: a paradigm for core promoter heterogeneity within metazoan protein-coding genes

31 March 2020

1 reference

Accurate positioning of RNA polymerase II on a natural TATA-less promoter is independent of TATA-binding-protein-associated factors and initiator-binding proteins

31 March 2020

1 reference

A dinucleotide deletion in the ankyrin promoter alters gene expression, transcription initiation and TFIID complex formation in hereditary spherocytosis

31 March 2020

1 reference

ATG deserts define a novel core promoter subclass

31 March 2020

1 reference

The initiator directs the assembly of a transcription factor IID-dependent transcription complex

31 March 2020

1 reference

Crystal structure of the nucleosome core particle at 2.8 A resolution

31 March 2020

1 reference

Histone H3 acetylated at lysine 9 in promoter is associated with low nucleosome density in the vicinity of transcription start site in human cell

31 March 2020

1 reference

Dynamic nucleosomes and gene transcription

31 March 2020

1 reference

Cellular memory and dynamic regulation of polycomb group proteins

31 March 2020

1 reference

A genomic code for nucleosome positioning

31 March 2020

1 reference

Dynamic usage of transcription start sites within core promoters

31 March 2020

1 reference

Heterotachy in mammalian promoter evolution

31 March 2020

1 reference

Human histone gene organization: nonregular arrangement within a large cluster

31 March 2020

1 reference

Expression of the murine RanBP1 and Htf9-c genes is regulated from a shared bidirectional promoter during cell cycle progression

31 March 2020

1 reference

The genes COL4A5 and COL4A6, coding for basement membrane collagen chains alpha 5(IV) and alpha 6(IV), are located head-to-head in close proximity on human chromosome Xq22 and COL4A6 is transcribed from two alternative promoters

31 March 2020

1 reference

An abundance of bidirectional promoters in the human genome

31 March 2020

1 reference

Complex Loci in human and mouse genomes

31 March 2020

1 reference

Antisense transcription in the mammalian transcriptome

31 March 2020

1 reference

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

31 March 2020

1 reference

Single-molecule analysis of RNA polymerase transcription

31 March 2020

1 reference

Multiple links between transcription and splicing

31 March 2020

1 reference

Exon tethering in transcription by RNA polymerase II

31 March 2020

1 reference

Human-mouse alignments with BLASTZ

31 March 2020

1 reference

Evidence for widespread degradation of gene control regions in hominid genomes

31 March 2020

1 reference

Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes

31 March 2020

1 reference

A genetic signature of interspecies variations in gene expression

31 March 2020

1 reference

Transcriptional network dynamics in macrophage activation

31 March 2020

1 reference

Histone H3 acetylation and H3 K4 methylation define distinct chromatin regions permissive for transgene expression

31 March 2020

1 reference

Genome-wide map of nucleosome acetylation and methylation in yeast

31 March 2020

1 reference

Genomewide analysis of nucleosome density histone acetylation and HDAC function in fission yeast

31 March 2020

1 reference

Myc-binding-site recognition in the human genome is determined by chromatin context

31 March 2020

1 reference

Clusters of internally primed transcripts reveal novel long noncoding RNAs

31 March 2020

1 reference

Genome-wide scanning of HoxB1-associated loci in mouse ES cells using an open-ended Chromosome Conformation Capture methodology

31 March 2020

1 reference

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

31 March 2020

1 reference

Replication and transcription: shaping the landscape of the genome

31 March 2020

1 reference

A predictive model for regulatory sequences directing liver-specific transcription.

31 March 2020

1 reference

Identification of conserved regulatory elements by comparative genome analysis

31 March 2020

1 reference

Genome sequencing in microfabricated high-density picolitre reactors

31 March 2020

1 reference

Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes

31 March 2020

1 reference

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays

31 March 2020

1 reference

The ENCODE (ENCyclopedia Of DNA Elements) Project

31 March 2020

1 reference

The DPE, a core promoter element for transcription by RNA polymerase II.

31 March 2020

1 reference

New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB

31 March 2020

1 reference

CpG islands in vertebrate genomes

31 March 2020

1 reference

Number of CpG islands and genes in human and mouse

31 March 2020

1 reference

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

31 March 2020

1 reference

The complexity of the mammalian transcriptome

31 March 2020

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

31 March 2020

1 reference

The UCSC Genome Browser Database: update 2006

31 March 2020

1 reference

GENCODE: producing a reference annotation for ENCODE

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NRG2026

1 reference

Dimensions Publication ID

16 August 2017

1006861692

0 references

1 reference