Regulatory polymorphisms modulate the expression of HLA class II molecules and promote autoimmunity. (Q36739751)

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8 March 2020

title

Regulatory polymorphisms modulate the expression of HLA class II molecules and promote autoimmunity (English)

1 reference

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8 March 2020

author

Periathamby Antony Raj

1

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8 March 2020

Shaheen Khan

4

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8 March 2020

Mitja Mitrovič

12

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8 March 2020

Jennifer A Kelly

14

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8 March 2020

Chris Cotsapas

17

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8 March 2020

Patrick M Gaffney

28

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8 March 2020

Edward K Wakeland

29

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8 March 2020

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Betty P Tsao

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8 March 2020

author name string

Ekta Rai

2

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8 March 2020

Ran Song

3

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8 March 2020

Benjamin E Wakeland

5

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8 March 2020

Kasthuribai Viswanathan

6

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8 March 2020

Carlos Arana

7

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8 March 2020

Chaoying Liang

8

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Bo Zhang

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8 March 2020

Igor Dozmorov

10

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8 March 2020

Ferdicia Carr-Johnson

11

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8 March 2020

Graham B Wiley

13

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8 March 2020

Bernard R Lauwerys

15

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8 March 2020

Nancy J Olsen

16

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8 March 2020

Christine K Garcia

18

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8 March 2020

Carol A Wise

19

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Swapan K Nath

21

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Chaim O Jacob

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8 March 2020

Chandrashekhar Pasare

25

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David R Karp

26

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8 March 2020

Quan Zhen Li

27

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8 March 2020

John B Harley

20

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8 March 2020

Judith A James

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8 March 2020

language of work or name

English

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publication date

15 February 2016

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8 March 2020

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8 March 2020

volume

5

1 reference

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A global reference for human genetic variation

8 March 2020

cites work

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Common SNPs explain a large proportion of the heritability for human height

29 September 2017

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29 September 2017

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29 September 2017

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A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus

29 September 2017

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Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus

29 September 2017

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29 September 2017

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29 September 2017

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Review of recent genome-wide association scans in lupus

29 September 2017

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Genetic susceptibility to SLE: new insights from fine mapping and genome-wide association studies

29 September 2017

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Mapping complex disease traits with global gene expression

29 September 2017

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Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus

29 September 2017

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Revealing the architecture of gene regulation: the promise of eQTL studies

29 September 2017

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29 September 2017

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29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Gender-specific influence of the chromosome 16 chemokine gene cluster on the susceptibility to Multiple Sclerosis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

A second generation human haplotype map of over 3.1 million SNPs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Systemic lupus erythematosus: multiple immunological phenotypes in a complex genetic disease.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

A tutorial on statistical methods for population association studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

The human major histocompatibility complex class II HLA-DRB1 and HLA-DQA1 genes are separated by a CTCF-binding enhancer-blocking element

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

A common haplotype of interferon regulatory factor 5 (IRF5) regulates splicing and expression and is associated with increased risk of systemic lupus erythematosus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Identification of autoantibody clusters that best predict lupus disease activity using glomerular proteome arrays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Efficiency and power in genetic association studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Regulation of MHC class II gene expression by the class II transactivator

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Ancient haplotypes of the HLA Class II region

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Long distance control of MHC class II expression by multiple distal enhancers regulated by regulatory factor X complex and CIITA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Limitations of the odds ratio in gauging the performance of a diagnostic, prognostic, or screening marker

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

SIFT: Predicting amino acid changes that affect protein function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

The allelic architecture of human disease genes: common disease-common variant... or not?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Small anti-viral compounds activate immune cells via the TLR7 MyD88-dependent signaling pathway

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Analysis of the role of variation of major histocompatibility complex class II expression on nonobese diabetic (NOD) peripheral T cell response

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Dendritic cells and the control of immunity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Developmental regulation of MHC class II transport in mouse dendritic cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Ancestral polymorphism of Mhc class II genes in mice: implications for balancing selection and the mammalian molecular clock

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Origin, maturation and antigen presenting function of dendritic cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Assembly, transport, and function of MHC class II molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

The basis of autoimmunity: Part I. Mechanisms of aberrant self-recognition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

The basis of autoimmunity: Part II. Genetic predisposition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Estimating the population attributable risk for multiple risk factors using case-control data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

HLA-DR antigens in systemic lupus erythematosus: association with specificity of autoantibody responses to nuclear antigens

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Ancient roots for polymorphism at the HLA-DQ alpha locus in primates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Regulation of MHC class II expression by interferon-gamma mediated by the transactivator gene CIITA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

The origin of MHC class II gene polymorphism within the genus Mus.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Use and misuse of population attributable fractions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

HLA-A and B polymorphisms predate the divergence of humans and chimpanzees

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

HLA-DQ beta gene contributes to susceptibility and resistance to insulin-dependent diabetes mellitus

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

A revised estimate of twin concordance in systemic lupus erythematosus

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Transcriptional programming of dendritic cells for enhanced MHC class II antigen presentation

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Autoantibodies and SLE: the threshold for disease

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

A large-scale screen for coding variants predisposing to psoriasis

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

A survey of rare coding variants in candidate genes in schizophrenia by deep sequencing.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Systemic lupus erythematosus.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Functional variants in the B-cell gene BANK1 are associated with systemic lupus erythematosus

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Mutations in the gene encoding the 3'-5' DNA exonuclease TREX1 are associated with systemic lupus erythematosus

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

C1q deficiency and autoimmunity: the effects of genetic background on disease expression.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Population attributable risk for breast cancer: diet, nutrition, and physical exercise

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

A significant increase of HLA-DR3 and DR2 in systemic lupus erythematosus among blacks

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4811771

Familial aggregation of systemic lupus erythematosus, rheumatoid arthritis, and other autoimmune diseases in 1,177 lupus patients from the GLADEL cohort

5 September 2018

1 reference

Inflammatory stimuli induce accumulation of MHC class II complexes on dendritic cells

21 January 2018

1 reference

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

The International HapMap Project

21 January 2018

1 reference

The HLA-DRβ1 amino acid positions 11–13–26 explain the majority of SLE–MHC associations

21 January 2018

1 reference

Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis

21 January 2018

1 reference

A nonsynonymous functional variant in integrin-αM (encoded by ITGAM) is associated with systemic lupus erythematosus

21 January 2018

1 reference

Beyond odds ratios — communicating disease risk based on genetic profiles

21 January 2018

1 reference

Population Attributable Fraction Estimation for Established Breast Cancer Risk Factors: Considering the Issues of High Prevalence and Unmodifiability

21 January 2018

1 reference

12 December 2020

The genetic attributable risk of breast and ovarian cancer

1 reference

12 December 2020

The effect of ethnicity on major histocompatibility complex complement allotypes and extended haplotypes in patients with systemic lupus erythematosus

1 reference

12 December 2020

Cumulative association of five genetic variants with prostate cancer

1 reference

12 December 2020

Development of Autoantibodies before the Clinical Onset of Systemic Lupus Erythematosus

1 reference

12 December 2020

Specific combinations of HLA-DR2 and DR3 class II haplotypes contribute graded risk for disease susceptibility and autoantibodies in human SLE

1 reference

12 December 2020

A simple method of determining confidence intervals for population attributable risk from complex surveys

1 reference

12 December 2020

Systemic lupus erythematosus

1 reference

12 December 2020

Identifiers

DOI

10.7554/ELIFE.12089

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880555 AND SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26880555 AND SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

26880555

1 reference