Inhibitory effect of a short Z-DNA forming sequence on transcription elongation by T7 RNA polymerase (Q36715566)

15 August 2017

Inhibitory effect of a short Z-DNA forming sequence on transcription elongation by T7 RNA polymerase (English)

1 reference

15 August 2017

7

Philip C Hanawalt

1 reference

15 August 2017

Jennifer V Ditlevson

1

1 reference

15 August 2017

Silvia Tornaletti

2

1 reference

15 August 2017

Boris P Belotserkovskii

3

1 reference

15 August 2017

Virginia Teijeiro

4

1 reference

15 August 2017

Guliang Wang

5

1 reference

15 August 2017

Karen M Vasquez

6

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15 August 2017

language of work or name

English

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publication date

9 April 2008

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15 August 2017

Nucleic Acids Research

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15 August 2017

36

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15 August 2017

10

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15 August 2017

3163-3170

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Non-B DNA conformations, mutagenesis and disease

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Z-DNA, an active element in the genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Z-DNA-forming sequences generate large-scale deletions in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Timeline: Z-DNA: the long road to biological function

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Subpathways of nucleotide excision repair and their regulation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Alleviating transcript insufficiency caused by Friedreich's ataxia triplet repeats

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

The GAA*TTC triplet repeat expanded in Friedreich's ataxia impedes transcription elongation by T7 RNA polymerase in a length and supercoil dependent manner

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Left-handed Z-DNA: structure and function

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Transcription through a simple DNA repeat blocks replication elongation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Transcription-coupled repair and human disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Energetics of B-to-Z transition in DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Conformational flexibility of junctions between contiguous B- and Z-DNAs in supercoiled plasmids

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Restriction endonucleases can be used to study B-Z junctions in supercoiled DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

The influence of an alternate template conformation on elongating phage T7 RNA polymerase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Molecular structure of a left-handed double helical DNA fragment at atomic resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

RNA polymerase slides home: pause and termination site recognition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Mechanism of R-loop formation at immunoglobulin class switch sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Characterization of an unusual, sequence-specific termination signal for T7 RNA polymerase

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Transcription induces the formation of a stable RNA.DNA hybrid in the immunoglobulin alpha switch region.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Comparative transcription of right- and left-handed poly[d(G-C)] by wheat germ RNA polymerase II

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

A theoretical study of formation of DNA noncanonical structures under negative superhelical stress.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Behavior of T7 RNA polymerase and mammalian RNA polymerase II at site-specific cisplatin adducts in the template DNA.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425487

Facile transition of poly[d(TG)·d(CA)] into a left-handed helix in physiological conditions

5 September 2018

1 reference

12 December 2020

Natural DNA sequences can form left-handed helices in low salt solution under conditions of topological constraint

1 reference

12 December 2020

Thermodynamics of the B–Z transition in superhelical DNA

1 reference

12 December 2020

Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence

1 reference

12 December 2020

The energetics of the B-Z transition in DNA

1 reference

12 December 2020

Chemical probing of the B-Z transition in negatively supercoiled DNA

1 reference

12 December 2020

A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription

1 reference

12 December 2020

Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions

1 reference

12 December 2020

Antibodies to Z-DNA interact with form V DNA

1 reference

12 December 2020

Negatively supercoiled plasmids contain left-handed Z-DNA segments as detected by specific antibody binding

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKN136

1 reference

15 August 2017

1 reference

15 August 2017

PubMed publication ID

18400779

1 reference