Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues. (Q36580016)

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22 January 2020

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25 November 2020

Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22318899 AND SRC:MED&resulttype=core&format=json

biomedical investigative technique

22 January 2020

main subject

1 reference

19 September 2019

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7 November 2019

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21 December 2019

1 reference

25 November 2020

1

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22 January 2020

author name string

Tadashi Yamamoto

series ordinal

2

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22 January 2020

publication date

1 April 2012

5 references

19 September 2019

7 November 2019

21 December 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22318899 AND SRC:MED&resulttype=core&format=json

22 January 2020

25 November 2020

5 references

19 September 2019

7 November 2019

21 December 2019

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22 January 2020

25 November 2020

12

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22 January 2020

issue

7

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22 January 2020

page(s)

1045-1058

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Creative Commons Attribution 2.5 Generic

22 January 2020

copyright license

4 references

19 September 2019

7 November 2019

21 December 2019

Proteome of formalin-fixed paraffin-embedded pancreatic ductal adenocarcinoma and lymph node metastases.

25 November 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Molecular characterisation of formalin-fixed paraffin-embedded (FFPE) breast tumour specimens using a custom 512-gene breast cancer bead array-based platform.

9 September 2017

1 reference

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Proteomic analysis of formalin-fixed paraffin-embedded pancreatic tissue using liquid chromatography tandem mass spectrometry

9 September 2017

1 reference

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Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry

9 September 2017

1 reference

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Use of Oncotype DX in Women with Node-Positive Breast Cancer

9 September 2017

1 reference

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Discovery of new molecular subtypes in oesophageal adenocarcinoma

9 September 2017

1 reference

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Producing Reverse Phase Protein Microarrays from Formalin-Fixed Tissues

9 September 2017

1 reference

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Preferential expression of potential markers for cancer stem cells in large cell neuroendocrine carcinoma of the lung. An FFPE proteomic study

9 September 2017

1 reference

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A quantitative proteomic analysis of FFPE melanoma

9 September 2017

1 reference

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KRAS mutation detection in paired frozen and Formalin-Fixed Paraffin-Embedded (FFPE) colorectal cancer tissues

9 September 2017

1 reference

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Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches.

9 September 2017

1 reference

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High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers

9 September 2017

1 reference

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Using quantitative proteomic analysis to understand genotype specific intrinsic drug resistance in melanoma

9 September 2017

1 reference

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Excavation of a buried treasure--DNA, mRNA, miRNA and protein analysis in formalin fixed, paraffin embedded tissues

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Impact of fixation time on GeLC-MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues.

9 September 2017

1 reference

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Quantitative Determination of Estrogen Receptor, Progesterone Receptor, and HER2 mRNA in Formalin-fixed Paraffin-embedded Tissue—A New Option for Predictive Biomarker Assessment in Breast Cancer

9 September 2017

1 reference

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Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Differential Proteomic Analysis of Late-Stage and Recurrent Breast Cancer from Formalin-Fixed Paraffin-Embedded Tissues

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Histo-proteomic profiling of formalin-fixed, paraffin-embedded tissue.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Molecular profiling of signalling pathways in formalin-fixed and paraffin-embedded cancer tissues

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Protein extraction of formalin-fixed, paraffin-embedded tissue enables robust proteomic profiles by mass spectrometry

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Protein unlocking procedures of formalin-fixed paraffin-embedded tissues: application to MALDI-TOF imaging MS investigations

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Mining the archival formalin-fixed paraffin-embedded tissue proteome: opportunities and challenges

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Antigen retrieval for proteomic characterization of formalin-fixed and paraffin-embedded tissues

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

'Tissue surrogates' as a model for archival formalin-fixed paraffin-embedded tissues.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Proteomics analysis of human coronary atherosclerotic plaque: a feasibility study of direct tissue proteomics by liquid chromatography and tandem mass spectrometry

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Heat-induced antigen retrieval: mechanisms and application to histochemistry

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Mass spectrometric analysis of formalin-fixed paraffin-embedded tissue: unlocking the proteome within

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Direct cancer tissue proteomics: a method to identify candidate cancer biomarkers from formalin-fixed paraffin-embedded archival tissues

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Efficient method for the proteomic analysis of fixed and embedded tissues

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Development and evaluation of a micro- and nanoscale proteomic sample preparation method

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Mechanisms of heat-induced antigen retrieval: analyses in vitro employing SDS-PAGE and immunohistochemistry.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Organic solvent extraction of proteins and peptides from serum as an effective sample preparation for detection and identification of biomarkers by mass spectrometry

9 September 2017

1 reference

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A molecular mechanism of formalin fixation and antigen retrieval

9 September 2017

1 reference

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Modeling formalin fixation and antigen retrieval with bovine pancreatic RNase A II. Interrelationship of cross-linking, immunoreactivity, and heat treatment

9 September 2017

1 reference

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Evaluation of ethanol-fixed, paraffin-embedded tissues for proteomic applications

9 September 2017

1 reference

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Proteome analysis of human stomach tissue: separation of soluble proteins by two-dimensional polyacrylamide gel electrophoresis and identification by mass spectrometry

9 September 2017

1 reference

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Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5' nuclease quantitative reverse transcription-polymerase chain reaction

9 September 2017

1 reference

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Protein glycosylation and diseases: blood and urinary oligosaccharides as markers for diagnosis and therapeutic monitoring

9 September 2017

1 reference

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Trifluoroethanol and colleagues: cosolvents come of age. Recent studies with peptides and proteins.

9 September 2017

1 reference

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Extraction and Analysis of Diagnostically Useful Proteins from Formalin-fixed, Paraffin-embedded Tissue Sections

9 September 2017

1 reference

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Extreme instability of myc mRNA in normal and transformed human cells.

9 September 2017

1 reference

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9 September 2017

Formaldehyde fixation

1 reference

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Diseases of abnormal protein glycosylation: an emerging area

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Comparison of different tissue sampling methods for protein extraction from formalin-fixed and paraffin-embedded tissue specimens.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Histopathologic variables predict Oncotype DX recurrence score

20 September 2018

1 reference

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Differential recovery of membrane proteins after extraction by aqueous methanol and trifluoroethanol

20 September 2018

1 reference

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Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

The role of protein phosphorylation in human health and disease. The Sir Hans Krebs Medal Lecture

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3561704

Quantitative protein analysis from formalin-fixed tissues: implications for translational clinical research and nanoscale molecular diagnosis

20 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002/PMIC.201100550

Protein Microarray-based Comparison of HER2, Estrogen Receptor, and Progesterone Receptor Status in Core Biopsies and Surgical Specimens From FFPE Breast Cancer Tissues

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002/PMIC.201100550

Isolation of proteins by heat-induced extraction from formalin-fixed, paraffin-embedded tissue and preparation of tryptic peptides for mass spectrometric analysis

21 January 2018

1 reference

12 December 2020

Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues

1 reference

12 December 2020

Evaluating preparative isoelectric focusing of complex peptide mixtures for tandem mass spectrometry-based proteomics: a case study in profiling chromatin-enriched subcellular fractions in Saccharomyces cerevisiae

1 reference

12 December 2020

Organic solvent extraction as a versatile procedure to identify hydrophobic chloroplast membrane proteins

1 reference

12 December 2020

Global microRNA expression profiling of microdissected tissues identifies miR-135b as a novel biomarker for pancreatic ductal adenocarcinoma

1 reference

12 December 2020

On the chemistry of formaldehyde fixation and its effects on immunohistochemical reactions

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12 December 2020

Effects of formaldehyde fixation on protein secondary structure: a calorimetric and infrared spectroscopic investigation

1 reference

12 December 2020

Identifiers

DOI

10.1002/PMIC.201100550

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22318899 AND SRC:MED&resulttype=core&format=json

22 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22318899 AND SRC:MED&resulttype=core&format=json

22 January 2020

PubMed publication ID

22318899

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22318899 AND SRC:MED&resulttype=core&format=json