Crosstalk between the protein surface and hydrophobic core in a core-swapped fibronectin type III domain (Q36536691)

14 August 2017

Crosstalk between the protein surface and hydrophobic core in a core-swapped fibronectin type III domain (English)

1 reference

14 August 2017

1 reference

Robert B Best

2

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author name string

Kate S Billings

series ordinal

1

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14 August 2017

Trevor J Rutherford

series ordinal

3

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14 August 2017

Jane Clarke

series ordinal

4

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14 August 2017

language of work or name

English

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publication date

25 October 2007

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14 August 2017

12

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Journal of Molecular Biology

inferred from page(s)

published in

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14 August 2017

375

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14 August 2017

2

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14 August 2017

560-571

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Designing an extracellular matrix protein with enhanced mechanical stability

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Conformational dynamics in loop swap mutants of homologous fibronectin type III domains

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

What contributions to protein side-chain dynamics are probed by NMR experiments? A molecular dynamics simulation analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

The family feud: do proteins with similar structures fold via the same pathway?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

The Pfam protein families database

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Approaching the speed limit for Greek Key beta-barrel formation: transition-state movement tunes folding rate of zinc-substituted azurin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Some factors in the interpretation of protein denaturation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Sequence conservation in Ig-like domains: the role of highly conserved proline residues in the fibronectin type III superfamily

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition state

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Characterisation of the transition states for protein folding: towards a new level of mechanistic detail in protein engineering analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

The folding nucleus of a fibronectin type III domain is composed of core residues of the immunoglobulin-like fold

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Two exposed amino acid residues confer thermostability on a cold shock protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Contact order, transition state placement and the refolding rates of single domain proteins.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Primary structure effects on peptide group hydrogen exchange

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Many of the immunoglobulin superfamily domains in cell adhesion molecules and surface receptors belong to a new structural set which is close to that containing variable domains

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

SCOP: a structural classification of proteins database for the investigation of sequences and structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Hydrogen Exchange in Proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Conformations of immunoglobulin hypervariable regions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Spectrin R16: broad energy barrier or sequential transition states?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Folding of beta-sandwich proteins: three-state transition of a fibronectin type III module

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

An integrated kinetic analysis of intermediates and transition states in protein folding reactions.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Mechanical unfolding of TNfn3: the unfolding pathway of a fnIII domain probed by protein engineering, AFM and MD simulation

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Hydrophobic core fluidity of homologous protein domains: relation of side-chain dynamics to core composition and packing

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Conformational plasticity in folding of the split beta-alpha-beta protein S6: evidence for burst-phase disruption of the native state

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

The roles of stability and contact order in determining protein folding rates

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

The effect of boundary selection on the stability and folding of the third fibronectin type III domain from human tenascin

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2291452

Protein stability parameters measured by hydrogen exchange

21 September 2018

1 reference

12 December 2020

Module-module interactions in the cell binding region of fibronectin: stability, flexibility and specificity

1 reference

12 December 2020

A comparison of the folding kinetics and thermodynamics of two homologous fibronectin type III modules

1 reference

12 December 2020

Folding and stability of a fibronectin type III domain of human tenascin

1 reference

12 December 2020

Backbone dynamics of homologous fibronectin type III cell adhesion domains from fibronectin and tenascin

1 reference

12 December 2020

Context-dependent nature of destabilizing mutations on the stability of FKBP12

1 reference

12 December 2020

Effects of core mutations on the folding of a beta-sheet protein: implications for backbone organization in the I-state

1 reference

12 December 2020

Folding studies of immunoglobulin-like β-sandwich proteins suggest that they share a common folding pathway

1 reference

12 December 2020

Conservation of folding and stability within a protein family: the tyrosine corner as an evolutionary cul-de-sac

1 reference

12 December 2020

The folding of an immunoglobulin-like Greek key protein is defined by a common-core nucleus and regions constrained by topology

1 reference

12 December 2020

Two proteins with the same structure respond very differently to mutation: the role of plasticity in protein stability

1 reference

12 December 2020

The mechanical hierarchies of fibronectin observed with single-molecule AFM

1 reference

12 December 2020

10.1016/J.JMB.2007.10.056

Identifiers

DOI

1 reference

14 August 2017

1 reference

14 August 2017

PubMed publication ID

18035373

1 reference