Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme (Q36520912)

14 August 2017

Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme (English)

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14 August 2017

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Andersen AA

1

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14 August 2017

Collins RA

series ordinal

2

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14 August 2017

language of work or name

English

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publication date

26 June 2001

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Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

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14 August 2017

98

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14 August 2017

14

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14 August 2017

7730-7735

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Structure of the ribozyme substrate hairpin of Neurospora VS RNA: a close look at the cleavage site

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Switching on and off with RNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A retroviral RNA kissing complex containing only two G⋅C base pairs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

NMR solution structure of the lead-dependent ribozyme: evidence for dynamics in RNA catalysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Crystal structure of a hepatitis delta virus ribozyme

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Structure of the dimer initiation complex of HIV-1 genomic RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A long-range pseudoknot is required for activity of the Neurospora VS ribozyme

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A secondary-structure model for the self-cleaving region of Neurospora VS RNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Bent helix formation between RNA hairpins with complementary loops

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Chemical probes for higher-order structure in RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Synthesis of small RNAs using T7 RNA polymerase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

A small metalloribozyme with a two-step mechanism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Structure of yeast phenylalanine transfer RNA at 2.5 A resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Dimerization of retroviral genomic RNAs: structural and functional implications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Antisense RNA control of plasmid R1 replication. The dominant product of the antisense rna-mrna binding is not a full RNA duplex.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

An antisense/target RNA duplex or a strong intramolecular RNA structure 5' of a translation initiation signal blocks ribosome binding: the case of plasmid R1.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Modification interference analysis of reactions using RNA substrates

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=35410

Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA.

28 June 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

NMR structure of the mature dimer initiation complex of HIV-1 genomic RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

Nucleotide sequence requirements for self-cleavage of Neurospora VS RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

RNA Structure and Stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

HIV-1 genome dimerization: formation kinetics and thermal stability of dimeric HIV-1Lai RNAs are not improved by the 1-232 and 296-790 regions flanking the kissing-loop domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

A kissing complex together with a stable dimer is involved in the HIV-1Lai RNA dimerization process in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

9 Specific labeling of 3′ termini of RNA with T4 RNA ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

A guide for probing native small nuclear RNA and ribonucleoprotein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

The hairpin ribozyme: structure, assembly and catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

Order, dynamics and metal-binding in the lead-dependent ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

Kissing and RNA stability in antisense control of plasmid replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.141039198

21 January 2018

Identifiers

DOI

10.1073/PNAS.141039198

1 reference

14 August 2017

0 references

1 reference

14 August 2017

PubMed publication ID

11427714

1 reference