Replication landscape of the human genome (Q36511235)

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4 March 2020

title

Replication landscape of the human genome (English)

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4 March 2020

1

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4 March 2020

Chun-Long Chen

8

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4 March 2020

Olivier Hyrien

9

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4 March 2020

author name string

Malik Kahli

2

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4 March 2020

Yves d'Aubenton-Carafa

3

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4 March 2020

Yan Jaszczyszyn

4

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4 March 2020

Yimin Shen

5

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4 March 2020

Maud Silvain

6

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4 March 2020

Claude Thermes

7

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4 March 2020

language of work or name

English

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publication date

11 January 2016

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4 March 2020

published in

Nature Communications

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volume

7

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4 March 2020

page(s)

10208

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Creative Commons Attribution 4.0 International

4 March 2020

copyright license

start time

11 January 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.

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Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines

30 September 2017

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

30 September 2017

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Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome

30 September 2017

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Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

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Replication-Associated Mutational Asymmetry in the Human Genome

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Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription

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Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

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Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

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Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection

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30 September 2017

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30 September 2017

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30 September 2017

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Nuclear transcription is essential for specification of mammalian replication origins

30 September 2017

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Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins

30 September 2017

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Replication timing of human chromosome 6.

30 September 2017

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DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding

30 September 2017

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An episomal mammalian replicon: sequence-independent binding of the origin recognition complex

30 September 2017

1 reference

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CpG methylation of DNA restricts prereplication complex assembly in Xenopus egg extracts.

30 September 2017

1 reference

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Sequence-independent DNA binding and replication initiation by the human origin recognition complex

30 September 2017

1 reference

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Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

MCM2-7 complexes bind chromatin in a distributed pattern surrounding the origin recognition complex in Xenopus egg extracts.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Bi-directional replication and random termination.

30 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Human minichromosome maintenance proteins and human origin recognition complex 2 protein on chromatin

30 September 2017

1 reference

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Analyzing genomes with cumulative skew diagrams

30 September 2017

1 reference

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Lagging-Strand, Early-Labelling, and Two-Dimensional Gel Assays Suggest Multiple Potential Initiation Sites in the Chinese Hamster Dihydrofolate Reductase Origin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Characterizing replication intermediates in the amplified CHO dihydrofolate reductase domain by two novel gel electrophoretic techniques

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Asymmetric substitution patterns in the two DNA strands of bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

The migration behaviour of DNA replicative intermediates containing an internal bubble analyzed by two-dimensional agarose gel electrophoresis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Initiation of DNA replication in the dihydrofolate reductase locus is confined to the early S period in CHO cells synchronized with the plant amino acid mimosine

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

The spatial and temporal organization of origin firing during the S-phase of fission yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Intrinsic coupling of lagging-strand synthesis to chromatin assembly.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

DNA replication timing is deterministic at the level of chromosomal domains but stochastic at the level of replicons in Xenopus egg extracts.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

The Chinese hamster dihydrofolate reductase replication origin decision point follows activation of transcription and suppresses initiation of replication within transcription units

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Mapping Replication Origins by Quantifying Relative Abundance of Nascent DNA Strands Using Competitive Polymerase Chain Reaction

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Nuclear stability and transcriptional directionality separate functionally distinct RNA species

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Human replication proteins hCdc21, hCdc46 and P1Mcm3 bind chromatin uniformly before S-phase and are displaced locally during DNA replication

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729899

Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos

4 December 2018

1 reference

12 December 2020

From DNA sequence analysis to modeling replication in the human genome

1 reference

12 December 2020

DNA replication timing data corroborate in silico human replication origin predictions

1 reference

12 December 2020

Transition in specification of embryonic metazoan DNA replication origins

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCOMMS10208

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26751768 AND SRC:MED&resulttype=core&format=json

4 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26751768 AND SRC:MED&resulttype=core&format=json

4 March 2020

PubMed publication ID

26751768

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26751768 AND SRC:MED&resulttype=core&format=json