Spliceosome database: a tool for tracking components of the spliceosome (Q36491462)

14 August 2017

Spliceosome database: a tool for tracking components of the spliceosome (English)

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14 August 2017

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Ivan Cvitkovic

1

1 reference

14 August 2017

Melissa S Jurica

series ordinal

2

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14 August 2017

language of work or name

English

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publication date

30 October 2012

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14 August 2017

Nucleic Acids Research

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14 August 2017

41

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14 August 2017

Database issue

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14 August 2017

D132-41

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Creative Commons Attribution-NonCommercial 3.0 Unported

14 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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30 September 2017

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FlyBase 101 - the basics of navigating FlyBase

30 September 2017

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Functional mammalian spliceosomal complex E contains SMN complex proteins in addition to U1 and U2 snRNPs.

30 September 2017

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Saccharomyces Genome Database: the genomics resource of budding yeast

30 September 2017

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30 September 2017

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Semiquantitative proteomic analysis of the human spliceosome via a novel two-dimensional gel electrophoresis method

30 September 2017

1 reference

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Breaking Up the C Complex Spliceosome Shows Stable Association of Proteins with the Lariat Intron Intermediate

30 September 2017

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UniProt Knowledgebase: a hub of integrated protein data

30 September 2017

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Spliceosome Structure and Function

30 September 2017

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Entrez Gene: gene-centered information at NCBI

30 September 2017

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The BioGRID Interaction Database: 2011 update

30 September 2017

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The RCSB Protein Data Bank: redesigned web site and web services

30 September 2017

1 reference

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Characterization of purified human Bact spliceosomal complexes reveals compositional and morphological changes during spliceosome activation and first step catalysis

30 September 2017

1 reference

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Analysis of spliceosomal proteins in Trypanosomatids reveals novel functions in mRNA processing

30 September 2017

1 reference

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The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome

30 September 2017

1 reference

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A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300.

30 September 2017

1 reference

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The role of exon sequences in C complex spliceosome structure

30 September 2017

1 reference

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SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Spliceosomal proteomics in Trypanosoma brucei reveal new RNA splicing factors

30 September 2017

1 reference

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The spliceosome: design principles of a dynamic RNP machine

30 September 2017

1 reference

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Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes

30 September 2017

1 reference

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Polypyrimidine tract binding protein controls the transition from exon definition to an intron defined spliceosome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Polypyrimidine tract binding protein blocks the 5' splice site-dependent assembly of U2AF and the prespliceosomal E complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Dim1p is required for efficient splicing and export of mRNA encoding lid1p, a component of the fission yeast anaphase-promoting complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome

30 September 2017

1 reference

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The spliceosome: the most complex macromolecular machine in the cell?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Pre-mRNA splicing: awash in a sea of proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Nuclear coactivator-62 kDa/Ski-interacting protein is a nuclear matrix-associated coactivator that may couple vitamin D receptor-mediated transcription and RNA splicing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

The Clf1p splicing factor promotes spliceosome assembly through N-terminal tetratricopeptide repeat contacts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Comprehensive proteomic analysis of the human spliceosome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Large-scale proteomic analysis of the human spliceosome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Characterization of interactions among the Cef1p-Prp19p-associated splicing complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Composition and functional characterization of the yeast spliceosomal penta-snRNP.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

The Protein Data Bank. A computer-based archival file for macromolecular structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Structural bioinformatics of the human spliceosomal proteome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Proteomic analysis of the U1 snRNP of Schizosaccharomyces pombe reveals three essential organism-specific proteins

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Release of SF3 from the intron branchpoint activates the first step of pre-mRNA splicing

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Three-dimensional structure of a pre-catalytic human spliceosomal complex B.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531166

The splicing factor PSF is part of a large complex that assembles in the absence of pre-mRNA and contains all five snRNPs

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23118483

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS999

1 reference

journals/nar/CvitkovicJ13

14 August 2017

1 reference

DBLP Dataset 2021-01-02

release_zmvfqcdyavhhhdms65t7hjopni

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zmvfqcdyavhhhdms65t7hjopni

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

14 August 2017

PubMed publication ID

23118483

1 reference