A biomolecular isolation framework for eco-systems biology. (Q36477714)

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7 February 2020

title

A biomolecular isolation framework for eco-systems biology (English)

1 reference

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7 February 2020

1 reference

2

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7 February 2020

Jenny Renaut

4

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7 February 2020

Paul Wilmes

6

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7 February 2020

author name string

Hugo Roume

1

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7 February 2020

Thekla Cordes

3

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7 February 2020

Karsten Hiller

5

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7 February 2020

publication date

5 July 2012

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7 February 2020

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7 February 2020

volume

7

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7 February 2020

issue

1

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7 February 2020

page(s)

110-121

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Simultaneous isolation of DNA, RNA, and protein from Medicago truncatula L.

7 February 2020

cites work

1 reference

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Metabolome-proteome differentiation coupled to microbial divergence

30 September 2017

1 reference

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AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.

30 September 2017

1 reference

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The gut microbiota modulates host energy and lipid metabolism in mice

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Simultaneous isolation of DNA, RNA, and proteins for genetic, epigenetic, transcriptomic, and proteomic analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

The dynamic genetic repertoire of microbial communities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Microbial community gene expression in ocean surface waters

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Symbiotic gut microbes modulate human metabolic phenotypes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Phylogeny, physiology and distribution of 'Candidatus Microthrix calida', a new Microthrix species isolated from industrial activated sludge wastewater treatment plants

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

RNA integrity and the effect on the real-time qRT-PCR performance

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Community structure and metabolism through reconstruction of microbial genomes from the environment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Value of A260/A280 ratios for measurement of purity of nucleic acids

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

A concordance correlation coefficient to evaluate reproducibility

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Omics for understanding microbial functional dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Evaluation of isolation methods and RNA integrity for bacterial RNA quantitation

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Molecular eco-systems biology: towards an understanding of community function

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Concurrent mRNA and protein extraction from the same experimental sample using a commercially available column-based RNA preparation kit.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Community proteomics of a natural microbial biofilm

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3526178

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

21 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038/ISMEJ.2012.72

Column-based method to simultaneously extract DNA, RNA, and proteins from the same sample

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22763648

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Improved method for simultaneous isolation of proteins and nucleic acids

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22763648

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Deuterium-exchange metabolomics identifies N-methyl lyso phosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities

1 reference

Crossref

https://api.crossref.org/works/10.1038/ISMEJ.2012.72

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2012.72

1 reference

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7 February 2020

1 reference

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7 February 2020

PubMed publication ID

22763648

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22763648 AND SRC:MED&resulttype=core&format=json