Conformational equilibria and rates of localized motion within hepatitis B virus capsids (Q36453595)

14 August 2017

Conformational equilibria and rates of localized motion within hepatitis B virus capsids (English)

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14 August 2017

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Jonathan K Hilmer

1

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Adam Zlotnick

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Adam Zlotnick

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2

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author name string

Brian Bothner

series ordinal

3

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14 August 2017

language of work or name

English

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publication date

22 October 2007

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14 August 2017

14

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Journal of Molecular Biology

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published in

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14 August 2017

375

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14 August 2017

2

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14 August 2017

581-863

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describes a project that uses

14 August 2017

ImageJ

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2238684/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Comparison of proteolytic susceptibility in phosphoglycerate kinases from yeast and E. coli: modulation of conformational ensembles without altering structure or stability

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Determination of conformationally heterogeneous states of proteins

30 September 2017

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Global structural changes in hepatitis B virus capsids induced by the assembly effector HAP1.

30 September 2017

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Fundamental and biotechnological applications of neutron scattering measurements for macromolecular dynamics

30 September 2017

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Native hepatitis B virions and capsids visualized by electron cryomicroscopy

30 September 2017

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Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences

30 September 2017

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S-adenosylmethionine stabilizes cystathionine beta-synthase and modulates redox capacity

30 September 2017

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Enhanced local symmetry interactions globally stabilize a mutant virus capsid that maintains infectivity and capsid dynamics

30 September 2017

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Structures of the bacterial ribosome at 3.5 A resolution

30 September 2017

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Intrinsic dynamics of an enzyme underlies catalysis

30 September 2017

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Hydrogen exchange mass spectrometry for the analysis of protein dynamics

30 September 2017

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Reverse transcription-associated dephosphorylation of hepadnavirus nucleocapsids

30 September 2017

1 reference

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A heteroaryldihydropyrimidine activates and can misdirect hepatitis B virus capsid assembly

30 September 2017

1 reference

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Pulse proteolysis: A simple method for quantitative determination of protein stability and ligand binding

30 September 2017

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The energy landscape as a unifying theme in molecular science

30 September 2017

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Calcium ions affect the hepatitis B virus core assembly.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Exposure of RNA templates and encapsidation of spliced viral RNA are influenced by the arginine-rich domain of human hepatitis B virus core antigen (HBcAg 165-173).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Hepatitis B virus nucleocapsids formed by carboxy-terminally mutated core proteins contain spliced viral genomes but lack full-size DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Hepatitis B virus capsid assembly is enhanced by naturally occurring mutation F97L.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Probing protein structure by limited proteolysis.

30 September 2017

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Antivirals interacting with hepatitis B virus core protein and core mutations may misdirect capsid assembly in a similar fashion

30 September 2017

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30 September 2017

Virus particle dynamics

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Nuclear import of hepatitis B virus capsids and release of the viral genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Protein-folding kinetics and mechanisms studied by pulse-labeling and mass spectrometry

30 September 2017

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Fast-response proteomics by accelerated in-gel digestion of proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Inhibition of hepatitis B virus replication by drug-induced depletion of nucleocapsids

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Poliovirus cell entry: common structural themes in viral cell entry pathways

30 September 2017

1 reference

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A small molecule inhibits and misdirects assembly of hepatitis B virus capsids

30 September 2017

1 reference

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Structural dynamics, an intrinsic property of viral capsids

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Peptide aptamers targeting the hepatitis B virus core protein: a new class of molecules with antiviral activity

30 September 2017

1 reference

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Limited proteolysis of bovine alpha-lactalbumin: isolation and characterization of protein domains

30 September 2017

1 reference

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The crystal structure of the human hepatitis B virus capsid

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Phosphorylation-dependent binding of hepatitis B virus core particles to the nuclear pore complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Antiviral agent blocks breathing of the common cold virus.

30 September 2017

1 reference

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Evidence of Viral Capsid Dynamics Using Limited Proteolysis and Mass Spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: conformational disorder mediates binding diversity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Primary structure effects on peptide group hydrogen exchange

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Phosphorylation of the duck hepatitis B virus capsid protein associated with conformational changes in the C terminus.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Three-dimensional structure of hepatitis B virus core particles determined by electron cryomicroscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Effect of core protein phosphorylation by protein kinase C on encapsidation of RNA within core particles of hepatitis B virus.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Hepatitis core antigen produced in Escherichia coli: subunit composition, conformational analysis, and in vitro capsid assembly

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

The arginine-rich domain of hepatitis B virus precore and core proteins contains a signal for nuclear transport

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Cell-induced conformational change in poliovirus: externalization of the amino terminus of VP1 is responsible for liposome binding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Molecular recognition. Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

The arginine-rich domain of the hepatitis B virus core protein is required for pregenome encapsidation and productive viral positive-strand DNA synthesis but not for virus assembly

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Hepatitis B virus capsid particles are assembled from core-protein dimer precursors

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Characterization of nuclear localization of a hepatitis B virus precore protein derivative P22.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Maturation of a tetravirus capsid alters the dynamic properties and creates a metastable complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Roles of the three major phosphorylation sites of hepatitis B virus core protein in viral replication

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Analysis of enzyme specificity by multiple substrate kinetics

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Study of the Thermal-Denaturation Mechanism of Hen Egg-White Lysozyme through Proteolytic Degradation

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

BAY 41-4109 has multiple effects on Hepatitis B virus capsid assembly

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Gamma-adaptin, a novel ubiquitin-interacting adaptor, and Nedd4 ubiquitin ligase control hepatitis B virus maturation

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Native state energetics of the Src SH2 domain: evidence for a partially structured state in the denatured ensemble

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Efforts toward developing direct probes of protein dynamics

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Kinetic characterization of sequencing grade modified trypsin

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Probing the high energy states in proteins by proteolysis

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Zinc ions trigger conformational change and oligomerization of hepatitis B virus capsid protein

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Central Role of a Serine Phosphorylation Site within Duck Hepatitis B Virus Core Protein for Capsid Trafficking and Genome Release

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Observed hysteresis of virus capsid disassembly is implicit in kinetic models of assembly

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Weak protein-protein interactions are sufficient to drive assembly of hepatitis B virus capsids

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

A theoretical model successfully identifies features of hepatitis B virus capsid assembly

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Dimorphism of hepatitis B virus capsids is strongly influenced by the C-terminus of the capsid protein

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

FG-Rich Repeats of Nuclear Pore Proteins Form a Three-Dimensional Meshwork with Hydrogel-Like Properties

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238684

Kinetics of beta-casein hydrolysis by wild-type and engineered trypsin

4 December 2018

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12 December 2020

A systematic and general proteolytic method for defining structural and functional domains of proteins

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12 December 2020

Structural features of the Abeta amyloid fibril elucidated by limited proteolysis

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12 December 2020

Fast, Facile, Hypersensitive Assays for Ribonucleolytic Activity

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12 December 2020

Morphological Irregularities in Dane Particle Cores

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12 December 2020

Unfolding rates of globular proteins determined by kinetics of proteolysis

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12 December 2020

Protein stability parameters measured by hydrogen exchange

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12 December 2020

Hydrogen-deuterium exchange in free and prodomain-complexed subtilisin

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12 December 2020

10.1016/J.JMB.2007.10.044

Identifiers

DOI

1 reference

14 August 2017

1 reference

14 August 2017

PubMed publication ID

18022640

1 reference