Haplotype-based methods for detecting uncommon causal variants with common SNPs (Q36441989)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22706849 AND SRC:MED&resulttype=core&format=json

5 February 2020

title

Haplotype-based methods for detecting uncommon causal variants with common SNPs (English)

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5 February 2020

1

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5 February 2020

5

Guimin Gao

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5 February 2020

author name string

Nengjun Yi

2

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5 February 2020

Degui Zhi

3

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5 February 2020

Kui Zhang

4

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5 February 2020

Hemant K Tiwari

6

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5 February 2020

Nianjun Liu

7

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5 February 2020

publication date

15 June 2012

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5 February 2020

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5 February 2020

volume

36

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5 February 2020

issue

6

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5 February 2020

page(s)

572-582

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5 February 2020

1 reference

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Evaluation of pooled association tests for rare variant identification.

30 September 2017

1 reference

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Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

The real cost of sequencing: higher than you think!

30 September 2017

1 reference

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Studying gene and gene-environment effects of uncommon and common variants on continuous traits: a marker-set approach using gene-trait similarity regression

30 September 2017

1 reference

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DASH: a method for identical-by-descent haplotype mapping uncovers association with recent variation

30 September 2017

1 reference

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An evolutionary framework for association testing in resequencing studies.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Discovering joint associations between disease and gene pairs with a novel similarity test.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Genome-wide searching of rare genetic variants in WTCCC data

30 September 2017

1 reference

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Efficient calculation of P-value and power for quadratic form statistics in multilocus association testing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Pooled association tests for rare variants in exon-resequencing studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

A data-adaptive sum test for disease association with multiple common or rare variants

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Phylogenetics applied to genotype/phenotype association and selection analyses with sequence data from angptl4 in humans

30 September 2017

1 reference

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Detecting rare variants for complex traits using family and unrelated data

30 September 2017

1 reference

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Finding the missing heritability of complex diseases

30 September 2017

1 reference

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An evaluation of statistical approaches to rare variant analysis in genetic association studies

30 September 2017

1 reference

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A novel haplotype-sharing approach for genome-wide case-control association studies implicates the calpastatin gene in Parkinson's disease

30 September 2017

1 reference

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A groupwise association test for rare mutations using a weighted sum statistic

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

30 September 2017

1 reference

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Rare loss-of-function mutations in ANGPTL family members contribute to plasma triglyceride levels in humans.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Concept, design and implementation of a cardiovascular gene-centric 50 k SNP array for large-scale genomic association studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Power comparisons between similarity-based multilocus association methods, logistic regression, and score tests for haplotypes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Common and rare variants in multifactorial susceptibility to common diseases

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Association testing by haplotype-sharing methods applicable to whole-genome analysis

30 September 2017

1 reference

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Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

30 September 2017

1 reference

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Statistical models for haplotype sharing in case-parent trio data.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Population-based resequencing of ANGPTL4 uncovers variations that reduce triglycerides and increase HDL.

30 September 2017

1 reference

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Calibrating a coalescent simulation of human genome sequence variation

30 September 2017

1 reference

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A survey of haplotype variants at several disease candidate genes: the importance of rare variants for complex diseases.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Evaluating associations of haplotypes with traits

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

On the identification of disease mutations by the analysis of haplotype similarity and goodness of fit.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Score tests for association between traits and haplotypes when linkage phase is ambiguous

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Next-generation association studies for complex traits

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

To Identify Associations with Rare Variants, Just WHaIT: Weighted Haplotype and Imputation-Based Tests

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

AnNOS3Haplotype Is Protective against Hypertension in a Caucasian Population

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

An E-M algorithm and testing strategy for multiple-locus haplotypes

28 June 2018

1 reference

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HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

A new association test using haplotype similarity.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

The use of inferred haplotypes in downstream analyses

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Evaluating coverage of genome-wide association studies

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Characterization of multilocus linkage disequilibrium.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3513398

Sequential Monte Carlo p-values

21 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002/GEPI.21650

Haplotypes produced from rare variants in the promoter and coding regions of angiotensinogen contribute to variation in angiotensinogen levels

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002/GEPI.21650

Analysis of single-locus tests to detect gene/disease associations

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002/GEPI.21650

21 January 2018

Identifiers

DOI

10.1002/GEPI.21650

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22706849 AND SRC:MED&resulttype=core&format=json

release_plyrzxcvrrcafpb7jdo3m3inze

5 February 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/plyrzxcvrrcafpb7jdo3m3inze

mapped directly with Wikidata item

24 November 2022

based on heuristic

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22706849 AND SRC:MED&resulttype=core&format=json

5 February 2020

PubMed publication ID

22706849

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22706849 AND SRC:MED&resulttype=core&format=json