Extensive concerted evolution of rice paralogs and the road to regaining independence (Q36287800)

13 August 2017

Extensive concerted evolution of rice paralogs and the road to regaining independence (English)

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13 August 2017

2

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13 August 2017

John E Bowers

3

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Andrew H Paterson

series ordinal

5

object named as

Andrew H Paterson

1 reference

13 August 2017

Xiyin Wang

1

1 reference

13 August 2017

Frank A Feltus

series ordinal

4

1 reference

13 August 2017

language of work or name

English

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publication date

1 November 2007

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13 August 2017

11

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inferred from page(s)

published in

Genetics

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13 August 2017

177

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13 August 2017

3

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13 August 2017

1753-1763

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Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Structure, function, and evolution of the tRNA endonucleases of Archaea: an example of subfunctionalization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

The Genomes of Oryza sativa: a history of duplications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Duplication and divergence: the evolution of new genes and old ideas

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

The early stages of duplicate gene evolution.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Evolution by gene duplication revisited: differentiation of regulatory elements versus proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Gene conversion drives GC content evolution in mammalian histones

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Selection in the evolution of gene duplications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

The probability of preservation of a newly arisen gene duplicate

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Resistance gene complexes: evolution and utilization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

The evolutionary fate and consequences of duplicate genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Duplicated genes evolve independently after polyploid formation in cotton

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Some models of gene conversion for treating the evolution of multigene families.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Basic local alignment search tool

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

On the role of RNA in gene amplification

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Duplication and DNA segmental loss in the rice genome: implications for diploidization

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Rapid concerted evolution via gene conversion at the Drosophila hsp70 genes

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Statistical tests for detecting gene conversion.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2147972

Studies on mitotic gene conversion inUstilago

22 September 2018

1 reference

12 December 2020

Unequal crossing over in the ribosomal DNA of Saccharomyces cerevisiae

1 reference

12 December 2020

Evolution of duplicate genes in a tetraploid animal, Xenopus laevis

1 reference

12 December 2020

Gene conversions may obscure actin gene family relationships

1 reference

12 December 2020

Gene conversion drives within genic sequences: concerted evolution of ribosomal RNA genes in bacteria and archaea

1 reference

12 December 2020

Gene Duplication and Gene Conversion in the Caenorhabditis elegans Genome

1 reference

12 December 2020

Possible significances of duplication in evolution

1 reference

12 December 2020

Very low gene duplication rate in the yeast genome

1 reference

12 December 2020

Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes

1 reference

12 December 2020

The impact of sequence divergence and DNA mismatch repair on homeologous recombination in Arabidopsis

1 reference

12 December 2020

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Genome-wide search of gene conversions in duplicated genes of mouse and rat

1 reference

12 December 2020

10.1534/GENETICS.107.073197

Identifiers

DOI

1 reference

13 August 2017

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13 August 2017

PubMed publication ID

18039882

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