Identification of avian W-linked contigs by short-read sequencing (Q36192588)

12 August 2017

Identification of avian W-linked contigs by short-read sequencing (English)

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12 August 2017

Nancy Chen

1

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12 August 2017

Daniel W Bellott

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2

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12 August 2017

David C Page

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3

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12 August 2017

Andrew G Clark

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4

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12 August 2017

language of work or name

English

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publication date

14 May 2012

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12 August 2017

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12 August 2017

13

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12 August 2017

183

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describes a project that uses

12 August 2017

MUMmer

object named as

MUMMER

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Genome structural variation discovery and genotyping

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Limitations of next-generation genome sequence assembly

1 October 2017

1 reference

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Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Computational methods for discovering structural variation with next-generation sequencing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

The avian Z-linked gene DMRT1 is required for male sex determination in the chicken

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Genetic evidence against a role for W-linked histidine triad nucleotide binding protein (HINTW) in avian sex determination.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Mapping short DNA sequencing reads and calling variants using mapping quality scores

1 October 2017

1 reference

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The impact of next-generation sequencing technology on genetics

1 October 2017

1 reference

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Molecular evolutionary genomics of birds

1 October 2017

1 reference

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Sequence finishing and mapping of Drosophila melanogaster heterochromatin

1 October 2017

1 reference

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A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Versatile and open software for comparing large genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Sex determination: insights from the chicken.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Molecular and cytological characterization of SspI-family repetitive sequence on the chicken W chromosome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Genomic and genetic definition of a functional human centromere

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Strategies for the systematic sequencing of complex genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

ASW: a gene with conserved avian W-linkage and female specific expression in chick embryonic gonad

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Wpkci, encoding an altered form of PKCI, is conserved widely on the avian W chromosome and expressed in early female embryos: implication of its role in female sex determination

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Comparative painting reveals strong chromosome homology over 80 million years of bird evolution.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

A DNA test to sex most birds

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Evolution of the avian sex chromosomes from an ancestral pair of autosomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

The human Y chromosome: overlapping DNA clones spanning the euchromatic region

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

First gene on the avian W chromosome (CHD) provides a tag for universal sexing of non-ratite birds

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Heteroduplex molecules cause sexing errors in a standard molecular protocol for avian sexing.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

New tools for sex identification and the study of sex allocation in birds.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Reassignment of chicken W chromosome sequences to the Z chromosome by fluorescence in situ hybridization (FISH).

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Sexual conflict via maternal-effect genes in ZW species

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and Turkey

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3428670

Parallel divergence and degradation of the avian W sex chromosome

22 September 2018

1 reference

12 December 2020

Chicken spindlin genes on W and Z chromosomes: transcriptional expression of both genes and dynamic behavior of spindlin in interphase and mitotic cells

1 reference

12 December 2020

Evolution of the avian sex chromosomes and their role in sex determination

1 reference

12 December 2020

The Y chromosome as a battle ground for sexual selection

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-13-183

1 reference

Dimensions Publication ID

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

22583744

1 reference