Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage (Q36158751)

12 August 2017

Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage (English)

1 reference

12 August 2017

Acinetobacter baumannii

1 reference

1 reference

6

Lenie Dijkshoorn

1 reference

12 August 2017

Jason W Sahl

1

1 reference

12 August 2017

Mariateresa Del Franco

2

1 reference

12 August 2017

Spyros Pournaras

3

1 reference

12 August 2017

Rebecca E Colman

4

1 reference

12 August 2017

Nabil Karah

5

1 reference

12 August 2017

Raffaele Zarrilli

7

1 reference

12 August 2017

language of work or name

English

0 references

publication date

14 October 2015

1 reference

12 August 2017

1 reference

12 August 2017

5

1 reference

12 August 2017

15188

1 reference

Creative Commons Attribution 4.0 International

12 August 2017

start time

14 October 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence

2 October 2017

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CRISPR-cas subtype I-Fb in Acinetobacter baumannii: evolution and utilization for strain subtyping.

2 October 2017

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Comparative genomic analysis of Acinetobacter baumannii clinical isolates reveals extensive genomic variation and diverse antibiotic resistance determinants

2 October 2017

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Bacterial phylogenetic reconstruction from whole genomes is robust to recombination but demographic inference is not.

2 October 2017

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SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

2 October 2017

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Variation in the OC locus of Acinetobacter baumannii genomes predicts extensive structural diversity in the lipooligosaccharide

2 October 2017

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Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal

2 October 2017

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The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes

2 October 2017

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Trimmomatic: a flexible trimmer for Illumina sequence data

2 October 2017

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

2 October 2017

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New insights into dissemination and variation of the health care-associated pathogen Acinetobacter baumannii from genomic analysis

2 October 2017

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2 October 2017

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Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter

2 October 2017

1 reference

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Global evolution of multidrug-resistant Acinetobacter baumannii clonal lineages.

2 October 2017

1 reference

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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

2 October 2017

1 reference

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Novel variants of AbaR resistance islands with a common backbone in Acinetobacter baumannii isolates of European clone II

2 October 2017

1 reference

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The genomics of Acinetobacter baumannii: insights into genome plasticity, antimicrobial resistance and pathogenicity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Genome organization of epidemic Acinetobacter baumannii strains

2 October 2017

1 reference

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PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species

2 October 2017

1 reference

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Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Error correction of high-throughput sequencing datasets with non-uniform coverage

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

phangorn: phylogenetic analysis in R

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Multidrug resistant Acinetobacter

2 October 2017

1 reference

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Search and clustering orders of magnitude faster than BLAST

2 October 2017

1 reference

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

2 October 2017

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Genomewide analysis of divergence of antibiotic resistance determinants in closely related isolates of Acinetobacter baumannii

2 October 2017

1 reference

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The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool

2 October 2017

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Prodigal: prokaryotic gene recognition and translation initiation site identification

2 October 2017

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Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

2 October 2017

1 reference

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Circos: an information aesthetic for comparative genomics

2 October 2017

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Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii

2 October 2017

1 reference

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Multi-drug resistant Acinetobacter infections in critically injured Canadian forces soldiers

2 October 2017

1 reference

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Global challenge of multidrug-resistant Acinetobacter baumannii

2 October 2017

1 reference

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Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

2 October 2017

1 reference

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Biofilms and antimicrobial resistance.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Visualization of comparative genomic analyses by BLAST score ratio

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Antimicrobial resistance of Acinetobacter spp. in Europe

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

ARB: a software environment for sequence data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Versatile and open software for comparing large genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Emerging carbapenemases in Gram-negative aerobes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

BLAT—The BLAST-Like Alignment Tool

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Acinetobacter baumannii extensively drug resistant lineages in Buenos Aires hospitals differ from the international clones I-III.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Characteristics of epidemic and sporadic strains of Acinetobacter baumannii isolated in Abu Dhabi hospitals

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Identification of acquired antimicrobial resistance genes

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Genome sequences of three Acinetobacter baumannii strains assigned to the multilocus sequence typing genotypes ST2, ST25, and ST78.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

The K1 capsular polysaccharide of Acinetobacter baumannii strain 307-0294 is a major virulence factor

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Dissemination of New Delhi metallo-β-lactamase-1-producing Acinetobacter baumannii in Europe

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Acinetobacter baumannii virulence is enhanced in Galleria mellonella following biofilm adaptation

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Evolution of multidrug-resistant Acinetobacter baumannii clonal lineages: a 10 year study in Greece (2000-09)

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

A diversity of OXA-carbapenemases and class 1 integrons among carbapenem-resistant Acinetobacter baumannii clinical isolates from Sweden belonging to different international clonal lineages

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Widespread carbapenem resistant Acinetobacter baumannii clones in Italian hospitals revealed by a multicenter study

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Serum resistance and biofilm formation in clinical isolates of Acinetobacter baumannii

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Inferring evolutionary trees with PAUP*.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Sequence file format conversion with command-line readseq

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

The role of ISAba1 in expression of OXA carbapenemase genes in Acinetobacter baumannii.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Resistance trends of Acinetobacter spp. in Latin America and characterization of international dissemination of multi-drug resistant strains: five-year report of the SENTRY Antimicrobial Surveillance Program

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604477

Gene array analysis of adrenal glands in broiler chickens following ACTH treatment

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038/SREP15188

THE RETENTION INDEX AND THE RESCALED CONSISTENCY INDEX

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038/SREP15188

Extreme drug resistance in Acinetobacter baumannii infections in intensive care units, South Korea

21 January 2018

1 reference

12 December 2020

Molecular epidemiology of a clonal outbreak of multidrug-resistant Acinetobacter baumannii in a university hospital in Italy

1 reference

12 December 2020

Bacteria recovered from patients admitted to a deployed U.S. military hospital in Baghdad, Iraq

1 reference

12 December 2020

Molecular epidemiological investigation of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries with a multilocus sequence typing scheme

1 reference

12 December 2020

Identifiers

DOI

10.1038/SREP15188

1 reference

12 August 2017

1 reference

12 August 2017

PubMed publication ID

26462752

1 reference