Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum. (Q36127576)

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22 March 2020

title

Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum (English)

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22 March 2020

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3

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22 March 2020

author name string

Andrea Hahn

1

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22 March 2020

Amit Sanyal

2

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22 March 2020

Anamaris M Colberg-Poley

4

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22 March 2020

Joseph Campos

5

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22 March 2020

Mary C Rose

6

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22 March 2020

Marcos Pérez-Losada

7

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22 March 2020

publication date

5 September 2016

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Journal of Microbiological Methods

22 March 2020

published in

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22 March 2020

volume

130

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22 March 2020

page(s)

95-99

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Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system

22 March 2020

cites work

1 reference

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A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

2 July 2018

1 reference

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Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework

2 July 2018

1 reference

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Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering

2 July 2018

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The vocabulary of microbiome research: a proposal

2 July 2018

1 reference

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Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods

2 July 2018

1 reference

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Implications of multiple freeze-thawing on respiratory samples for culture-independent analyses

2 July 2018

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Time between collection and storage significantly influences bacterial sequence composition in sputum samples from cystic fibrosis respiratory infections

2 July 2018

1 reference

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Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis.

2 July 2018

1 reference

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Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform

2 July 2018

1 reference

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Culture-based diagnostic microbiology in cystic fibrosis: can we simplify the complexity?

2 July 2018

1 reference

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Changes in cystic fibrosis airway microbiota at pulmonary exacerbation

2 July 2018

1 reference

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The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations

2 July 2018

1 reference

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Decade-long bacterial community dynamics in cystic fibrosis airways

2 July 2018

1 reference

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Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

2 July 2018

1 reference

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Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

2 July 2018

1 reference

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Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys

2 July 2018

1 reference

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UCHIME improves sensitivity and speed of chimera detection

2 July 2018

1 reference

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Mucoid and nonmucoid Burkholderia cepacia complex bacteria in cystic fibrosis infections

2 July 2018

1 reference

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QIIME allows analysis of high-throughput community sequencing data

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5065784

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5065784

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

2 July 2018

1 reference

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Management of pulmonary disease in patients with cystic fibrosis

2 July 2018

1 reference

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Prevalence and persistence of Escherichia coli in the airways of cystic fibrosis patients—An unrecognized CF pathogen?

2 July 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27609714

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.MIMET.2016.09.002

1 reference

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22 March 2020

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22 March 2020

PubMed publication ID

27609714

1 reference