Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan (Q36123188)

12 August 2017

Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan (English)

1 reference

12 August 2017

1 reference

linkage disequilibrium

1 reference

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

Derek M Bickhart

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

Paolo Ajmone Marsan

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

Ricardo Da Fonseca

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

author name string

Adam T H Utsunomiya

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

Daniel J A Santos

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

Solomon A Boison

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

Johann Sölkner

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

José F Garcia

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

Marcos V G B da Silva

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

Yuri T Utsunomiya

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

language of work or name

English

0 references

publication date

5 September 2016

1 reference

12 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

volume

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

page(s)

705

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

Misassembly detection using paired-end sequence reads and optical mapping data

13 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Novel Features of the Prenatal Horn Bud Development in Cattle (Bos taurus)

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Accuracy of genotype imputation in Nelore cattle

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Second-generation PLINK: rising to the challenge of larger and richer datasets

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

A new approach for efficient genotype imputation using information from relatives

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Novel insights into the bovine polled phenotype and horn ontogenesis in Bovidae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Imputation of high-density genotypes in the Fleckvieh cattle population

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Genomic position mapping discrepancies of commercial SNP chips

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Refinement of Bos taurus sequence assembly based on BAC-FISH experiments.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Repetitive DNA and next-generation sequencing: computational challenges and solutions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Characteristics of linkage disequilibrium in North American Holsteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Genome-wide association identifies ATOH7 as a major gene determining human optic disc size

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Detection and correction of false segmental duplications caused by genome mis-assembly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Genome assembly forensics: finding the elusive mis-assembly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Family-based association tests for genomewide association scans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

PLINK: a tool set for whole-genome association and population-based linkage analyses

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

GenABEL: an R library for genome-wide association analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Strategies for single nucleotide polymorphism (SNP) genotyping to enhance genotype imputation in Gyr (Bos indicus) dairy cattle: Comparison of commercially available SNP chips.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Beware of mis-assembled genomes

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Fine mapping of the polled locus to a 1-Mb region on bovine chromosome 1q12.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Development of the innervation of long bones: expression of the growth-associated protein 43.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5011828

Bone Reinnervation After Fracture: A Study in the Rat

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27595709

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Imputation accuracy is robust to cattle reference genome updates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27595709

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-016-3049-8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

13 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27595709 AND SRC:MED&resulttype=core&format=json

13 June 2020

PubMed publication ID

27595709

1 reference