Preferential integration of adeno-associated virus type 2 into a polypyrimidine/polypurine-rich region within AAVS1. (Q36098970)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17626070 AND SRC:MED&resulttype=core&format=json

2 January 2020

title

Preferential integration of adeno-associated virus type 2 into a polypyrimidine/polypurine-rich region within AAVS1 (English)

1 reference

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2 January 2020

1

1 reference

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2 January 2020

author name string

Roland A Owens

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17626070 AND SRC:MED&resulttype=core&format=json

2 January 2020

language of work or name

English

0 references

publication date

11 July 2007

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17626070 AND SRC:MED&resulttype=core&format=json

2 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17626070 AND SRC:MED&resulttype=core&format=json

2 January 2020

volume

81

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2 January 2020

issue

18

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2 January 2020

page(s)

9718-9726

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17626070 AND SRC:MED&resulttype=core&format=json

Specific and efficient binding of xeroderma pigmentosum complementation group A to double-strand/single-strand DNA junctions with 3'- and/or 5'-ssDNA branches

2 January 2020

cites work

1 reference

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Host cell DNA repair pathways in adeno-associated viral genome processing

2 October 2017

1 reference

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Triplex-stimulated intermolecular recombination at a single-copy genomic target

2 October 2017

1 reference

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A binding site for Pur alpha and Pur beta is structurally unstable and is required for replication in vivo from the rat aldolase B origin

2 October 2017

1 reference

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Characterization of adeno-associated virus genomes isolated from human tissues

2 October 2017

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Large-scale analysis of adeno-associated virus vector integration sites in normal human cells

2 October 2017

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The Artemis:DNA-PKcs endonuclease cleaves DNA loops, flaps, and gaps

2 October 2017

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Mechanism of DNA binding and localized strand separation by Pur alpha and comparison with Pur family member, Pur beta

2 October 2017

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Distance and affinity dependence of triplex-induced recombination.

2 October 2017

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The life and death of DNA-PK.

2 October 2017

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Site-specific integration of functional transgenes into the human genome by adeno/AAV hybrid vectors.

2 October 2017

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Molecular mechanisms of mammalian DNA repair and the DNA damage checkpoints

2 October 2017

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DNA-dependent PK inhibits adeno-associated virus DNA integration

2 October 2017

1 reference

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Repair of DNA double strand breaks by non-homologous end joining

2 October 2017

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2 October 2017

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Stimulation of D-loop formation by polypurine/polypyrimidine sequences

2 October 2017

1 reference

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Identification and characterization of an adeno-associated virus integration site in CV-1 cells from the African green monkey

2 October 2017

1 reference

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Radiosensitive SCID patients with Artemis gene mutations show a complete B-cell differentiation arrest at the pre-B-cell receptor checkpoint in bone marrow.

2 October 2017

1 reference

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Kinetics and frequency of adeno-associated virus site-specific integration into human chromosome 19 monitored by quantitative real-time PCR.

2 October 2017

1 reference

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Efficient integration of recombinant adeno-associated virus DNA vectors requires a p5-rep sequence in cis.

2 October 2017

1 reference

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Hairpin opening and overhang processing by an Artemis/DNA-dependent protein kinase complex in nonhomologous end joining and V(D)J recombination

2 October 2017

1 reference

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Triplex forming oligonucleotides: sequence-specific tools for gene targeting

2 October 2017

1 reference

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Effect of DNA-dependent protein kinase on the molecular fate of the rAAV2 genome in skeletal muscle

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Site-specific integration of an adeno-associated virus vector plasmid mediated by regulated expression of rep based on Cre-loxP recombination

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Roles of adeno-associated virus Rep protein and human chromosome 19 in site-specific recombination

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Conditional site-specific integration into human chromosome 19 by using a ligand-dependent chimeric adeno-associated virus/Rep protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Cell cycle arrest and morphological alterations following microinjection of NIH3T3 cells with Pur alpha

2 October 2017

1 reference

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BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

2 October 2017

1 reference

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Targeted integration of adeno-associated virus-derived plasmids in transfected human cells.

2 October 2017

1 reference

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Lipofection of purified adeno-associated virus Rep68 protein: toward a chromosome-targeting nonviral particle.

2 October 2017

1 reference

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Site-specific integration in mammalian cells mediated by a new hybrid baculovirus-adeno-associated virus vector.

2 October 2017

1 reference

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Adeno-associated virus Rep proteins target DNA sequences to a unique locus in the human genome

2 October 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

2 October 2017

1 reference

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The adeno-associated virus type 2 p40 promoter requires a proximal Sp1 interaction and a p19 CArG-like element to facilitate Rep transactivation

2 October 2017

1 reference

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The cellular transcription factor SP1 and an unknown cellular protein are required to mediate Rep protein activation of the adeno-associated virus p19 promoter.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Recombinant adeno-associated virus (AAV-CFTR) vectors do not integrate in a site-specific fashion in an immortalized epithelial cell line.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

The recombination signals for adeno-associated virus site-specific integration

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Identification of a DNA-binding domain in the amino terminus of adeno-associated virus Rep proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Characterization of the DNA-binding properties of the myeloid zinc finger protein MZF1: two independent DNA-binding domains recognize two DNA consensus sequences with a common G-rich core

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Adeno-associated virus DNA replication in vitro: activation by a maltose binding protein/Rep 68 fusion protein.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Interaction of the adeno-associated virus Rep protein with a sequence within the A palindrome of the viral terminal repeat.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Identification of linear DNA sequences that specifically bind the adeno-associated virus Rep protein.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Adeno-associated virus (AAV) Rep proteins mediate complex formation between AAV DNA and its integration site in human DNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Conservation in human and mouse Pur alpha of a motif common to several proteins involved in initiation of DNA replication

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Site-specific integration by adeno-associated virus is directed by a cellular DNA sequence

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Asymmetric replication in vitro from a human sequence element is dependent on adeno-associated virus Rep protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Recombinant junctions formed by site-specific integration of adeno-associated virus into an episome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Nucleotide sequence and organization of the adeno-associated virus 2 genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Cellular transformation by adenovirus type 5 is influenced by the viral DNA polymerase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Site-specific integration by adeno-associated virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Targeted integration of adeno-associated virus (AAV) into human chromosome 19

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Characterization of a preferred site on human chromosome 19q for integration of adeno-associated virus DNA by non-homologous recombination

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Adeno-associated virus autointerference

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Effects of adeno-associated virus DNA hairpin structure on recombination

2 October 2017

1 reference

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The adeno-associated virus Rep78 major regulatory/transformation suppressor protein binds cellular Sp1 in vitro and evidence of a biological effect.

2 July 2018

1 reference

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Mutations in the carboxy terminus of adeno-associated virus 2 capsid proteins affect viral infectivity: lack of an RGD integrin-binding motif

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Targeted integration of transfected and infected adeno-associated virus vectors containing the neomycin resistance gene

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Organization of adeno-associated virus DNA in latently infected Detroit 6 cells

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

GC box binding induces phosphorylation of Sp1 by a DNA-dependent protein kinase

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

In vitro resolution of covalently joined AAV chromosome ends

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Identification of the Polypyrimidine Tract Binding Protein-associated Splicing Factor·p54(nrb) Complex as a Candidate DNA Double-strand Break Rejoining Factor

2 July 2018

1 reference

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Evidence of chromosomal integration of AAV DNA in human testis tissue

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Targeted transgene integration into transgenic mouse fibroblasts carrying the full-length human AAVS1 locus mediated by HSV/AAV rep( ) hybrid amplicon vector.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

Free DNA ends are essential for concatemerization of synthetic double-stranded adeno-associated virus vector genomes transfected into mouse hepatocytes in vivo

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2045435

The PUR element stimulates transcription and is a target for single strand-specific binding factors conserved among vertebrate classes

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17626070

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.00746-07

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17626070 AND SRC:MED&resulttype=core&format=json

2 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17626070 AND SRC:MED&resulttype=core&format=json

2 January 2020

PubMed publication ID

17626070

1 reference