Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)). (Q36011775)

11 August 2017

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)). (English)

1 reference

Herpetosiphon aurantiacus

11 August 2017

0 references

Herpetosiphon aurantiacus

1 reference

based on heuristic

inferred from title

whole genome sequencing

1 reference

1 reference

23

1 reference

11 August 2017

24

1 reference

11 August 2017

25

1 reference

11 August 2017

7

Alla Lapidus

0 references

Hans-Peter Klenk

27

Hans-Peter Klenk

0 references

Tijana Glavina Del Rio

10

Tijana Glavina Del Rio

0 references

Tanja Woyke

26

Tanja Woyke

0 references

Miriam Land

21

Miriam Land

1 reference

11 August 2017

1

Hajnalka Kiss

1 reference

11 August 2017

Julia A Maresca

5

0 references

Cliff Han

Cliff Han

17

0 references

Sam Pitluck

13

Sam Pitluck

1 reference

11 August 2017

16

Lynne Goodwin

1 reference

11 August 2017

22

Loren Hauser

1 reference

11 August 2017

8

Susan Lucas

1 reference

11 August 2017

12

Hope Tice

1 reference

11 August 2017

18

John C Detter

1 reference

11 August 2017

6

Alex Copeland

1 reference

11 August 2017

15

David Bruce

1 reference

11 August 2017

11

Eileen Dalin

1 reference

11 August 2017

9

Kerrie W Berry

1 reference

11 August 2017

19

Jeremy Schmutz

1 reference

11 August 2017

20

Thomas Brettin

1 reference

11 August 2017

Markus Nett

2

1 reference

11 August 2017

Nicole Domin

3

1 reference

11 August 2017

Karin Martin

4

1 reference

11 August 2017

Paul Richardson

14

1 reference

11 August 2017

Donald A Bryant

28

1 reference

11 August 2017

23 December 2011

1 reference

Standards in genomic sciences

11 August 2017

1 reference

11 August 2017

5

1 reference

11 August 2017

3

1 reference

11 August 2017

356-370

1 reference

Emergence and modular evolution of a novel motility machinery in bacteria

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Uncovering the mystery of gliding motility in the myxobacteria

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Mutations in Flavobacterium johnsoniae sprE result in defects in gliding motility and protein secretion.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Development and use of a gene deletion strategy for Flavobacterium johnsoniae to identify the redundant gliding motility genes remF, remG, remH, and remI.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022)

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Flavobacterium johnsoniae sprB is part of an operon spanning the additional gliding motility genes sprC, sprD, and sprF.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Prodigal: prokaryotic gene recognition and translation initiation site identification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Flavobacterium johnsoniae gldN and gldO are partially redundant genes required for gliding motility and surface localization of SprB.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

The impact of genomics on the exploitation of the myxobacterial secondary metabolome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Genomic basis for natural product biosynthetic diversity in the actinomycetes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

IMG ER: a system for microbial genome annotation expert review and curation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Identification of a novel two-peptide lantibiotic, lichenicidin, following rational genome mining for LanM proteins.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

The biosynthetic pathway for myxol-2' fucoside (myxoxanthophyll) in the cyanobacterium Synechococcus sp. strain PCC 7002

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Thirteen posttranslational modifications convert a 14-residue peptide into the antibiotic thiocillin.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

A rapid bootstrap algorithm for the RAxML Web servers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

The biochemical basis for structural diversity in the carotenoids of chlorophototrophic bacteria

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

The minimum information about a genome sequence (MIGS) specification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Biosynthesis of enediyne antitumor antibiotics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

The chemistry of gliding bacteria

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Evolution of sensory complexity recorded in a myxobacterial genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Two genes encoding new carotenoid-modifying enzymes in the green sulfur bacterium Chlorobium tepidum

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Reclassification of Sphaerobacter thermophilus from the subclass Sphaerobacteridae in the phylum Actinobacteria to the class Thermomicrobia (emended description) in the phylum Chloroflexi (emended description).

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Multiple sequence alignment using partial order graphs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Gene ontology: tool for the unification of biology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Herpetosiphon aurantiacus gen. et sp. n., a new filamentous gliding organism.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Basic local alignment search tool

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Phylogenetic heterogeneity within the genus Herpetosiphon: transfer of the marine species Herpetosiphon cohaerens, Herpetosiphon nigricans and Herpetosiphon persicus to the genus Lewinella gen. nov. in the Flexibacter-Bacteroides-Cytophaga phylum

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

The fine structure of Herpetosiphon, and a note on the taxonomy of the genus

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

4-Hydroxyphenylglycine biosynthesis in Herpetosiphon aurantiacus: a case of gene duplication and catalytic divergence

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Make Histri: reconstructing the exchange history of bacterial and archaeal type strains

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

How many bootstrap replicates are necessary?

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Novel insights into siderophore formation in myxobacteria

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Absence of carotenes and presence of a tertiary methoxy group in a carotenoid from a thermophilic filamentous photosynthetic bacterium Roseiflexus castenholzii

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368417

Approved Lists of Bacterial Names

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.4056/SIGS.2194987

Siphonazole, an Unusual Metabolite fromHerpetosiphon sp.

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22675585

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Carotenoid glucosides and menaquinones from the gliding bacterium Herpetosiphon giganteus Hp a2

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22675585

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4056/SIGS.2194987

1 reference

Dimensions Publication ID

11 August 2017

0 references

1 reference

11 August 2017

PubMed publication ID

22675585

1 reference