Active DNA unwinding dynamics during processive DNA replication. (Q35991585)

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1 February 2020

title

Active DNA unwinding dynamics during processive DNA replication (English)

1 reference

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1 February 2020

2

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J. Ricardo Arias-gonzalez

1 February 2020

4

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1 February 2020

José María Valpuesta

5

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1 February 2020

Borja Ibarra

8

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1 February 2020

6

José L Carrascosa

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1 February 2020

author name string

José A Morin

1

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1 February 2020

José M Lázaro

3

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1 February 2020

Margarita Salas

7

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1 February 2020

language of work or name

English

0 references

publication date

9 May 2012

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Proceedings of the National Academy of Sciences of the United States of America

1 February 2020

published in

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volume

109

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issue

21

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page(s)

8115-8120

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DnaB helicase activity is modulated by DNA geometry and force

1 February 2020

cites work

1 reference

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Single molecule measurement of the "speed limit" of DNA polymerase

2 October 2017

1 reference

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Strand displacement by DNA polymerase III occurs through a tau-psi-chi link to single-stranded DNA-binding protein coating the lagging strand template

2 October 2017

1 reference

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Proofreading dynamics of a processive DNA polymerase

2 October 2017

1 reference

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Functional importance of bacteriophage phi29 DNA polymerase residue Tyr148 in primer-terminus stabilisation at the 3'-5' exonuclease active site

2 October 2017

1 reference

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Impediment of E. coli UvrD by DNA-destabilizing force reveals a strained-inchworm mechanism of DNA unwinding

2 October 2017

1 reference

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Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism

2 October 2017

1 reference

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NS3 helicase actively separates RNA strands and senses sequence barriers ahead of the opening fork

2 October 2017

1 reference

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Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases

2 October 2017

1 reference

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Single-molecule studies reveal dynamics of DNA unwinding by the ring-shaped T7 helicase

2 October 2017

1 reference

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Mechanism of DNA translocation in a replicative hexameric helicase

2 October 2017

1 reference

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A specific subdomain in phi29 DNA polymerase confers both processivity and strand-displacement capacity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Opening of nucleic-acid double strands by helicases: active versus passive opening.

2 October 2017

1 reference

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Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29.

2 October 2017

1 reference

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Mechanical processes in biochemistry

2 October 2017

1 reference

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Structure of the replicating complex of a pol alpha family DNA polymerase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

A general model for nucleic acid helicases and their "coupling" within macromolecular machines

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Unwinding the 'Gordian knot' of helicase action.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Structure and function of hexameric helicases.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Replication slippage of different DNA polymerases is inversely related to their strand displacement efficiency

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

A Hexameric Helicase Encircles One DNA Strand and Excludes the Other during DNA Unwinding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Mechanisms of helicase-catalyzed DNA unwinding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Analysis and suppression of DNA polymerase pauses associated with a trinucleotide consensus.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

3'-->5' exonuclease active site of phi 29 DNA polymerase. Evidence favoring a metal ion-assisted reaction mechanism

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Characterization of base-pair opening in deoxynucleotide duplexes using catalyzed exchange of the imino proton

2 October 2017

1 reference

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Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication

2 October 2017

1 reference

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Protein-priming of DNA replication

2 October 2017

1 reference

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Site-directed mutagenesis at the Exo III motif of phi 29 DNA polymerase; overlapping structural domains for the 3'-5' exonuclease and strand-displacement activities

2 October 2017

1 reference

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Single-molecule study of DNA polymerization activity of HIV-1 reverse transcriptase on DNA templates

2 October 2017

1 reference

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DNA synthesis provides the driving force to accelerate DNA unwinding by a helicase

11 July 2018

1 reference

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Nucleic acid unwinding by hepatitis C virus and bacteriophage t7 helicases is sensitive to base pair stability

11 July 2018

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The structural mechanism of translocation and helicase activity in T7 RNA polymerase

23 September 2018

1 reference

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Optical-trap force transducer that operates by direct measurement of light momentum

23 September 2018

1 reference

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Substitutions at Phe61 in the beta3-beta4 hairpin of HIV-1 reverse transcriptase reveal a role for the Fingers subdomain in strand displacement DNA synthesis

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Asymmetric interactions of hexameric bacteriophage T7 DNA helicase with the 5'- and 3'-tails of the forked DNA substrate.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361432

Decreased resistance to bacterial infection and granulocyte defects in IAP-deficient mice.

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.1204759109

Purification of bacteriophage phi 29 DNA polymerase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22573817

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Participation of the fingers subdomain of Escherichia coli DNA polymerase I in the strand displacement synthesis of DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22573817

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1204759109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22573817 AND SRC:MED&resulttype=core&format=json

1 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22573817 AND SRC:MED&resulttype=core&format=json

1 February 2020

PubMed publication ID

22573817

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22573817 AND SRC:MED&resulttype=core&format=json