Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over-producing strain (Q35984452)

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English	Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over-producing strain	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over-producing strain (English)

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Europe PubMed Central

PMC publication ID

11 August 2017

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comparative genomics

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based on heuristic

inferred from title

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based on heuristic

inferred from title

Saccharopolyspora erythraea

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Saccharopolyspora erythraea

1 reference

based on heuristic

inferred from title

1

object named as

Clelia Peano

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Miriana Durante

object named as

Miriana Durante

5

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object named as

Giovanni Mita

6

0 references

Silvio Bicciato

object named as

Silvio Bicciato

7

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Gianluca De Bellis

object named as

Gianluca De Bellis

8

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2

object named as

Adelfia Talà

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

3

object named as

Giorgio Corti

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

9

object named as

Pietro Alifano

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

author name string

Daniela Pasanisi

4

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

publication date

8 March 2012

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Europe PubMed Central

PMC publication ID

11 August 2017

Microbial Cell Factories

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

11

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Europe PubMed Central

PMC publication ID

11 August 2017

32

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Europe PubMed Central

PMC publication ID

11 August 2017

describes a project that uses

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MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

PREDA: an R-package to identify regional variations in genomic data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Identifying modules of coexpressed transcript units and their organization of Saccharopolyspora erythraea from time series gene expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Formation of the First Peptide Bond: The Structure of EF-P Bound to the 70S Ribosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Antibiotic overproduction by rpsL and rsmG mutants of various actinomycetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Phenotypes and gene expression profiles of Saccharopolyspora erythraea rifampicin-resistant (rif) mutants affected in erythromycin production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Structural and Functional Analysis of the E. coli NusB-S10 Transcription Antitermination Complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Transcription by moonlight: structural basis of an extraribosomal activity of ribosomal protein S10.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Activation of dormant bacterial genes by Nonomuraea sp. strain ATCC 39727 mutant-type RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

A key developmental regulator controls the synthesis of the antibiotic erythromycin in Saccharopolyspora erythraea

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays

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2 October 2017

Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics

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2 October 2017

From microbial differentiation to ribosome engineering

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Subcellular partitioning of transcription factors in Bacillus subtilis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Genetic improvement of processes yielding microbial products

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Significance analysis of time course microarray experiments

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2 October 2017

Systems biotechnology for strain improvement

1 reference

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2 October 2017

Microbial metabolomics: replacing trial-and-error by the unbiased selection and ranking of targets.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Transcriptional polarity in rRNA operons of Escherichia coli nusA and nusB mutant strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Engineering precursor flow for increased erythromycin production in Aeromicrobium erythreum

1 reference

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2 October 2017

Impact of 'ome' analyses on inverse metabolic engineering

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2 October 2017

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Statistical significance for genomewide studies

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2 October 2017

Genetic methods and strategies for secondary metabolite yield improvement in actinomycetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Process development and metabolic engineering for the overproduction of natural and unnatural polyketides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Metabolic engineering as an integrating platform for strain development

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

BldD is a direct regulator of key developmental genes in Streptomyces coelicolor A3(2).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

The crystal structure of NusB from Mycobacterium tuberculosis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Transcriptional organization of the erythromycin biosynthetic gene cluster of Saccharopolyspora erythraea.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Combinatorial approaches to polyketide biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

The bldD gene of Streptomyces coelicolor A3(2): a regulatory gene involved in morphogenesis and antibiotic production.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

The ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2) plays a conditional role in antibiotic production and morphological differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Genetic control of polyketide biosynthesis in the genus Streptomyces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Metabolic initiation of differentiation and secondary metabolism by Streptomyces griseus: significance of the stringent response (ppGpp) and GTP content in relation to A factor

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

Basic local alignment search tool

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2 October 2017

Organization of a cluster of erythromycin genes in Saccharopolyspora erythraea

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

2 October 2017

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11 July 2018

A relA/spoT homologous gene from Streptomyces coelicolor A3(2) controls antibiotic biosynthetic genes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

11 July 2018

IS1136, an insertion element in the erythromycin gene cluster of Saccharopolyspora erythraea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

11 July 2018

An unusually large multifunctional polypeptide in the erythromycin-producing polyketide synthase of Saccharopolyspora erythraea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

11 July 2018

Modular organization of genes required for complex polyketide biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

11 July 2018

The stringent response in Streptomyces coelicolor A3(2)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

11 July 2018

Complete biosynthesis of erythromycin A and designed analogs using E. coli as a heterologous host.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

24 September 2018

Guanosine 5'-diphosphate 3'-diphosphate (ppGpp) as a negative modulator of polynucleotide phosphorylase activity in a 'rare' actinomycete.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359211

24 September 2018

Interactions of elongation factor EF-P with the Escherichia coli ribosome.

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24 September 2018

Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338.

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24 September 2018

The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments

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24 September 2018

Effects of methylmalonyl-CoA mutase gene knockouts on erythromycin production in carbohydrate-based and oil-based fermentations of Saccharopolyspora erythraea.

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24 September 2018

Natural merodiploidy involving duplicated rpoB alleles affects secondary metabolism in a producer actinomycete.

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24 September 2018

Reverse engineering of industrial pharmaceutical-producing actinomycete strains using DNA microarrays.

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24 September 2018

Expression profiling of translation-associated genes in sporulating Bacillus subtilis and consequence of sporulation by gene inactivation.

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24 September 2018

Sequence to array: probing the genome's secrets.

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The gene encoding the elongation factor P protein is essential for viability and is required for protein synthesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22401291

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibiotic production from the ground up

1 reference

https://pubmed.ncbi.nlm.nih.gov/22401291

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The new genomics: global views of biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/22401291

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HPLC as a rapid means of monitoring erythromycin and tetracycline fermentation processes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22401291

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1475-2859-11-32

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

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