From deep TLS validation to ensembles of atomic models built from elemental motions (Q35927497)

11 August 2017

From deep TLS validation to ensembles of atomic models built from elemental motions (English)

1 reference

From deep TLS validation to ensembles of atomic models built from elemental motions. Addenda and corrigendum.

11 August 2017

corrigendum / erratum

1 reference

10.1107/S2059798316013048

DOI

12 July 2019

http://api.crossref.org/works?select=update-to&filter=doi:10.1107/S2059798316013048

author

Paul D. Adams

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5

1 reference

11 August 2017

James S Fraser

4

0 references

Alexandre Urzhumtsev

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1

object named as

Alexandre Urzhumtsev

1 reference

11 August 2017

2

Pavel V Afonine

1 reference

11 August 2017

Andrew H Van Benschoten

series ordinal

3

1 reference

11 August 2017

language of work or name

1 reference

28 July 2015

1 reference

Acta Crystallographica Section D: Biological Crystallography

11 August 2017

1 reference

11 August 2017

71

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11 August 2017

Pt 8

1 reference

11 August 2017

1668-1683

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Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

TLS from fundamentals to practice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Bulk-solvent and overall scaling revisited: faster calculations, improved results

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Intersubunit Bridge Formation Governs Agonist Efficacy at Nicotinic Acetylcholine 4 2 Receptors: UNIQUE ROLE OF HALOGEN BONDING REVEALED

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Validation of crystallographic models containing TLS or other descriptions of anisotropy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

PHENIX: a comprehensive Python-based system for macromolecular structure solution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Optimal description of a protein structure in terms of multiple groups undergoing TLS motion

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

A molecular viewer for the analysis of TLS rigid-body motion in macromolecules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Macromolecular TLS refinement in REFMAC at moderate resolutions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The structure and thermal motion of the B800-850 LH2 complex from Rps.acidophila at 2.0A resolution and 100K: new structural features and functionally relevant motions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Refinement of the arginine kinase transition-state analogue complex at 1.2 A resolution: mechanistic insights

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Conformational flexibility in T4 endonuclease VII revealed by crystallography: implications for substrate binding and cleavage

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Use of TLS parameters to model anisotropic displacements in macromolecular refinement

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The 1.0 A crystal structure of Ca(2 )-bound calmodulin: an analysis of disorder and implications for functionally relevant plasticity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Crystal structure of the cytosolic C2A-C2B domains of synaptotagmin III. Implications for Ca( 2)-independent snare complex interaction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Efficient anisotropic refinement of macromolecular structures using FFT

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid-body TLS model

2 October 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

2 October 2017

https://api.crossref.org/works/10.1107/S1399004715011426

Rigid protein motion as a model for crystallographic temperature factors

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The Protein Data Bank: a computer-based archival file for macromolecular structures

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Dynamics of folded proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The segmented anisotropic refinement of monoclinic papain by the application of the rigid-body TLS model and comparison to bovine ribonuclease A.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Domain flexibility in aspartic proteinases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Towards automated crystallographic structure refinement with phenix.refine

24 September 2018

1 reference

https://api.crossref.org/works/10.1107/S1399004715011426

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1107/S1399004715011426

On the handling of atomic anisotropic displacement parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1107/S1399004715011426

The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework

21 January 2018

1 reference

https://api.crossref.org/works/10.1107/S1399004715011426

TLSANL: TLS parameter-analysis program for segmented anisotropic refinement of macromolecular structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1107/S1399004715011426

10.1107/S1399004715011426

21 January 2018

Identifiers

DOI

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

26249348

1 reference