Metagenome-scale analysis yields insights into the structure and function of microbial communities in a copper bioleaching heap (Q35897071)

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5 March 2020

title

Metagenome-scale analysis yields insights into the structure and function of microbial communities in a copper bioleaching heap (English)

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5 March 2020

1

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5 March 2020

author name string

Jiaojiao Niu

2

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5 March 2020

Yili Liang

3

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5 March 2020

Xueduan Liu

4

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5 March 2020

Huaqun Yin

5

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5 March 2020

language of work or name

1 reference

19 January 2016

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5 March 2020

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5 March 2020

volume

17

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5 March 2020

page(s)

21

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An integrated insight into the response of sedimentary microbial communities to heavy metal contamination.

5 March 2020

cites work

1 reference

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Reclassification of 'Thiobacillus prosperus' Huber and Stetter 1989 as Acidihalobacter prosperus gen. nov., sp. nov., a member of the family Ectothiorhodospiraceae

11 July 2018

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Microbial diversity and metabolic networks in acid mine drainage habitats.

11 July 2018

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Insights from the metagenome of an acid salt lake: the role of biology in an extreme depositional environment

11 July 2018

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The aerobic respiratory chain of the acidophilic archaeon Ferroplasma acidiphilum: A membrane-bound complex oxidizing ferrous iron.

11 July 2018

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Comparative metagenomic and metatranscriptomic analyses of microbial communities in acid mine drainage

11 July 2018

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Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics.

11 July 2018

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Whole-genome sequencing reveals novel insights into sulfur oxidation in the extremophile Acidithiobacillus thiooxidans.

11 July 2018

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Metagenomic analysis of the viral community in Namib Desert hypoliths

11 July 2018

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Correlating microbial diversity patterns with geochemistry in an extreme and heterogeneous environment of mine tailings.

11 July 2018

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Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

11 July 2018

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Shifts in microbial community composition and function in the acidification of a lead/zinc mine tailings

11 July 2018

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RubisCO gene clusters found in a metagenome microarray from acid mine drainage

11 July 2018

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Proposal for a new class within the phylum Proteobacteria, Acidithiobacillia classis nov., with the type order Acidithiobacillales, and emended description of the class Gammaproteobacteria

11 July 2018

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STRING v9.1: protein-protein interaction networks, with increased coverage and integration

11 July 2018

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Insight into the evolution of the iron oxidation pathways.

11 July 2018

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Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara

11 July 2018

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Acidithiobacillus caldus sulfur oxidation model based on transcriptome analysis between the wild type and sulfur oxygenase reductase defective mutant

11 July 2018

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Biodiversity, metabolism and applications of acidophilic sulfur-metabolizing microorganisms

11 July 2018

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NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

11 July 2018

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Solvent tolerance in Gram-negative bacteria

11 July 2018

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Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments

11 July 2018

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Microbial diversity in anaerobic sediments at Rio Tinto, a naturally acidic environment with a high heavy metal content.

11 July 2018

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Spatial and temporal analysis of the microbial community in the tailings of a Pb-Zn mine generating acidic drainage

11 July 2018

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Integrative analysis of environmental sequences using MEGAN4

11 July 2018

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Bioenergetic challenges of microbial iron metabolisms.

11 July 2018

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Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

11 July 2018

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The iron-oxidizing proteobacteria

11 July 2018

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Organic solvent adaptation of Gram positive bacteria: applications and biotechnological potentials

11 July 2018

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Ecological aspects of the distribution of different autotrophic CO2 fixation pathways

11 July 2018

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Iron-oxidizing bacteria: an environmental and genomic perspective.

11 July 2018

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Autotrophic carbon fixation in archaea.

11 July 2018

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Acidithiobacillus ferrivorans, sp. nov.; facultatively anaerobic, psychrotolerant iron-, and sulfur-oxidizing acidophiles isolated from metal mine-impacted environments.

11 July 2018

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Microbial communities in acid mine drainage.

11 July 2018

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Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillus ferrooxidans

11 July 2018

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Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

11 July 2018

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Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations

11 July 2018

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MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes

11 July 2018

1 reference

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Carbon, iron and sulfur metabolism in acidophilic micro-organisms

11 July 2018

1 reference

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Quantitative microbial community analysis of three different sulfidic mine tailing dumps generating acid mine drainage

11 July 2018

1 reference

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Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

11 July 2018

1 reference

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Crystal structure studies on sulfur oxygenase reductase from Acidianus tengchongensis

11 July 2018

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Life in acid: pH homeostasis in acidophiles

11 July 2018

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Solvent-tolerant bacteria for biotransformations in two-phase fermentation systems.

11 July 2018

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MEGAN analysis of metagenomic data

11 July 2018

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MetaGene: prokaryotic gene finding from environmental genome shotgun sequences

11 July 2018

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Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction

11 July 2018

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

11 July 2018

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Stable-isotope probing of DNA: insights into the function of uncultivated microorganisms from isotopically labeled metagenomes

11 July 2018

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A bacterial view of the periodic table: genes and proteins for toxic inorganic ions.

11 July 2018

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Metagenomics for studying unculturable microorganisms: cutting the Gordian knot

11 July 2018

1 reference

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Evidence for autotrophic CO2 fixation via the reductive tricarboxylic acid cycle by members of the epsilon subdivision of proteobacteria

11 July 2018

1 reference

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Metagenomics: application of genomics to uncultured microorganisms

11 July 2018

1 reference

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Metagenomics: genomic analysis of microbial communities

11 July 2018

1 reference

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Metagenomics--the key to the uncultured microbes

11 July 2018

1 reference

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A novel enzyme, citryl-CoA synthetase, catalysing the first step of the citrate cleavage reaction in Hydrogenobacter thermophilus TK-6.

11 July 2018

1 reference

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The sulphur oxygenase reductase from Acidianus ambivalens is a multimeric protein containing a low-potential mononuclear non-haem iron centre

11 July 2018

1 reference

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Community structure and metabolism through reconstruction of microbial genomes from the environment

11 July 2018

1 reference

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The microbiology of acidic mine waters

11 July 2018

1 reference

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Microbial ecology of an extreme acidic environment, the Tinto River.

11 July 2018

1 reference

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Genomic analysis of uncultured marine viral communities

11 July 2018

1 reference

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Iron and oxidative stress in bacteria

11 July 2018

1 reference

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SOMETHING FROM ALMOST NOTHING: Carbon Dioxide Fixation in Chemoautotrophs

11 July 2018

1 reference

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Bacterial leaching of metal sulfides proceeds by two indirect mechanisms via thiosulfate or via polysulfides and sulfur

11 July 2018

1 reference

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Bacterial heavy metal resistance: new surprises.

11 July 2018

1 reference

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DNA recovery from soils of diverse composition.

11 July 2018

1 reference

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Mechanisms of membrane toxicity of hydrocarbons

11 July 2018

1 reference

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Metagenomic analysis reveals adaptations to a cold-adapted lifestyle in a low-temperature acid mine drainage stream

11 July 2018

1 reference

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Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska

24 September 2018

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Isolation and characterization of a novel Acidithiobacillus ferrivorans strain from the Chilean Altiplano: attachment and biofilm formation on pyrite at low temperature.

24 September 2018

1 reference

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Global transcriptional analysis of stress-response strategies in Acidithiobacillus ferrooxidans ATCC 23270 exposed to organic extractant--Lix984n

24 September 2018

1 reference

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Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

24 September 2018

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Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.

24 September 2018

1 reference

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Autotrophic CO2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: evidence for two ways of citrate cleavage.

24 September 2018

1 reference

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A novel enzyme, citryl-CoA lyase, catalysing the second step of the citrate cleavage reaction in Hydrogenobacter thermophilus TK-6.

24 September 2018

1 reference

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Cloning and characterization of three differentially expressed peroxidoxin genes from Leishmania chagasi. Evidence for an enzymatic detoxification of hydroxyl radicals

24 September 2018

1 reference

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Microbial Community Composition and Ecology of an Acidic Aquatic Environment: The Tinto River, Spain

24 September 2018

1 reference

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Molecular characterization of microbial populations in a low-grade copper ore bioleaching test heap

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/S12863-016-0330-4

STRUCTURE AND FUNCTION OF BENTHIC ALGAL COMMUNITIES IN AN EXTREMELY ACID RIVER1

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/S12863-016-0330-4

The Confluence of Heavy Metal Biooxidation and Heavy Metal Resistance: Implications for Bioleaching by Extreme Thermoacidophiles

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/S12863-016-0330-4

10.1186/S12863-016-0330-4

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26781463 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

5 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26781463 AND SRC:MED&resulttype=core&format=json

5 March 2020

PubMed publication ID

26781463

1 reference