Chromosomal footprinting of transcriptionally active and inactive oocyte-type 5S RNA genes of Xenopus laevis (Q35882514)

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25 September 2019

title

Chromosomal footprinting of transcriptionally active and inactive oocyte-type 5S RNA genes of Xenopus laevis (English)

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25 September 2019

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2

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25 September 2019

author name string

D R Engelke

series ordinal

1

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language of work or name

English

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publication date

1 October 1990

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25 September 2019

published in

Nucleic Acids Research

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25 September 2019

volume

18

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25 September 2019

issue

20

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25 September 2019

page(s)

6031-6037

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Cytoplasmic regulation of 5S RNA genes in nuclear-transplant embryos.

25 September 2019

cites work

1 reference

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Multiple factors are required for the accurate transcription of purified genes by RNA polymerase III.

11 July 2018

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Stable transcription complexes of Xenopus 5S RNA genes: a means to maintain the differentiated state.

11 July 2018

1 reference

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Transcription of Xenopus 5S ribosomal RNA genes.

11 July 2018

1 reference

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Control of 5S RNA transcription in Xenopus somatic cell chromatin: activation with an oocyte extract.

11 July 2018

1 reference

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Regular arrangement of nucleosomes on 5S rRNA genes in Xenopus laevis

11 July 2018

1 reference

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Transcription of class III genes: formation of preinitiation complexes

11 July 2018

1 reference

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Xenopus 5S gene transcription factor, TFIIIA: Characterization of a cDNA clone and measurement of RNA levels throughout development

11 July 2018

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11 July 2018

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Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes

11 July 2018

1 reference

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Structural analysis of a triple complex between the histone octamer, a Xenopus gene for 5S RNA and transcription factor IIIA.

11 July 2018

1 reference

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Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes

11 July 2018

1 reference

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Formation and stability of the 5 S RNA transcription complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Formation of a rate-limiting intermediate in 5S RNA gene transcription

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Rapid "footprinting" on supercoiled DNA.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

The 5S gene internal control region is composed of three distinct sequence elements, organized as two functional domains with variable spacing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Differential 5S RNA gene expression in vitro

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

DNA sequence-directed nucleosome reconstitution on 5S RNA genes of Xenopus laevis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

DNA sequence analysis with a modified bacteriophage T7 DNA polymerase

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Early replication and expression of oocyte-type 5S RNA genes in a Xenopus somatic cell line carrying a translocation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Identification of the binding site on 5S rRNA for the transcription factor IIIA: proposed structure of a common binding site on 5S rRNA and on the gene

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Developmental regulation of two 5S ribosomal RNA genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Transcription complexes that program Xenopus 5S RNA genes are stable in vivo

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Comparison of tRNA gene transcription complexes formed in vitro and in nuclei

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Direct sequencing of enzymatically amplified human genomic DNA

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

DNA replication in vitro erases a Xenopus 5S RNA gene transcription complex.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Mapping functional regions of transcription factor TFIIIA.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Genomic footprinting of a yeast tRNA gene reveals stable complexes over the 5'-flanking region

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Two TFIIIA activities regulate expression of the Xenopus 5S RNA gene families

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Differential transcription of Xenopus oocyte and somatic-type 5 S genes in a Xenopus oocyte extract.

11 July 2018

1 reference

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Differential order of replication of Xenopus laevis 5S RNA genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

The use of thin acrylamide gels for DNA sequencing

11 July 2018

1 reference

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The nucleotide sequence of oocyte 5S DNA in Xenopus laevis. II. The GC-rich region

11 July 2018

1 reference

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Cloned single repeating units of 5S DNA direct accurate transcription of 5S RNA when injected into Xenopus oocytes / Donald D. Brown, J. B. Gurdon. - (1978)

11 July 2018

1 reference

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Selective and accurate transcription of the Xenopus laevis 5S RNA genes in isolated chromatin by purified RNA polymerase III

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

Onset of 5 S RNA gene regulation during Xenopus embryogenesis.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332401

A 3' exonuclease activity degrades the pseudogene 5S RNA transcript and processes the major oocyte 5S RNA transcript in Xenopus oocytes

24 September 2018

1 reference

12 December 2020

Nonrandom alignment of nucleosomes on 5S RNA genes of X. laevis

1 reference

12 December 2020

The reactivation of developmentally inert 5S genes in somatic nuclei injected into Xenopus oocytes

1 reference

12 December 2020

Assembly of transcriptionally active 5S RNA gene chromatin in vitro

1 reference

12 December 2020

The canine major histocompatibility complex. Supertypic specificities defined by the Primed Lymphocyte Test (PLT)

1 reference

12 December 2020

Domains of the positive transcription factor specific for the Xenopus 5S RNA gene

1 reference

12 December 2020

The transcriptional regulation of Xenopus 5s RNA genes in chromatin: the roles of active stable transcription complexes and histone H1

1 reference

12 December 2020

An underlying repeat in some transcriptional control sequences corresponding to half a double helical turn of DNA

1 reference

12 December 2020

Mapping of the sites of protection on a 5 S RNA gene by the Xenopus transcription factor IIIA. A model for the interaction

1 reference

12 December 2020

Transient activation of oocyte 5S RNA genes in Xenopus embryos by raising the level of the trans-acting factor TFIIIA

1 reference

12 December 2020

Selective oxidation of the exonuclease domain of bacteriophage T7 DNA polymerase

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/18.20.6031

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2235485 AND SRC:MED&resulttype=core&format=json

25 September 2019

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2235485 AND SRC:MED&resulttype=core&format=json

25 September 2019

PubMed publication ID

2235485

1 reference