Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples. (Q35852065)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26605532 AND SRC:MED&resulttype=core&format=json

1 March 2020

title

Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples (English)

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1 March 2020

7

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1 March 2020

Teresa M. Przytycka

9

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11

David Levens

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1 March 2020

author name string

Wenfei Jin

1

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1 March 2020

Qingsong Tang

2

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1 March 2020

Mimi Wan

3

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1 March 2020

Kairong Cui

4

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1 March 2020

Yi Zhang

5

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1 March 2020

Gang Ren

6

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1 March 2020

Jeffrey Sklar

8

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1 March 2020

Richard Childs

10

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1 March 2020

Keji Zhao

12

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1 March 2020

language of work or name

English

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publication date

1 December 2015

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1 March 2020

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1 March 2020

volume

528

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issue

7580

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1 March 2020

page(s)

142-146

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Single-cell chromatin accessibility reveals principles of regulatory variation

1 March 2020

cites work

1 reference

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Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing

11 July 2018

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TXNL1 induces apoptosis in cisplatin resistant human gastric cancer cell lines

11 July 2018

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Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

11 July 2018

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Depletion of a putatively druggable class of phosphatidylinositol kinases inhibits growth of p53-null tumors

11 July 2018

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Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3.

11 July 2018

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Super-enhancers in the control of cell identity and disease

11 July 2018

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Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation

11 July 2018

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Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

11 July 2018

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Master transcription factors and mediator establish super-enhancers at key cell identity genes

11 July 2018

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Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

11 July 2018

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The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation

11 July 2018

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H2A.Z facilitates access of active and repressive complexes to chromatin in embryonic stem cell self-renewal and differentiation.

11 July 2018

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The accessible chromatin landscape of the human genome

11 July 2018

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An encyclopedia of mouse DNA elements (Mouse ENCODE).

11 July 2018

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Cancer genetics and epigenetics: two sides of the same coin?

11 July 2018

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Fast gapped-read alignment with Bowtie 2

11 July 2018

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HDAC2 and TXNL1 distinguish aneuploid from diploid colorectal cancers

11 July 2018

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Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

11 July 2018

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A unique chromatin signature uncovers early developmental enhancers in humans

11 July 2018

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

11 July 2018

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GREAT improves functional interpretation of cis-regulatory regions

11 July 2018

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DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells

11 July 2018

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11 July 2018

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The Sequence Alignment/Map format and SAMtools

11 July 2018

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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

11 July 2018

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Thioredoxin Txnl1/TRP32 is a redox-active cofactor of the 26 S proteasome

11 July 2018

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Model-based analysis of ChIP-Seq (MACS)

11 July 2018

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Combinatorial patterns of histone acetylations and methylations in the human genome

11 July 2018

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High-resolution mapping and characterization of open chromatin across the genome

11 July 2018

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Upregulation of HMGA2 in thyroid carcinomas: a novel molecular marker to distinguish between benign and malignant follicular neoplasias

11 July 2018

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

11 July 2018

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

11 July 2018

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Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping

11 July 2018

1 reference

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Expression profiling reveals a distinct transcription signature in follicular thyroid carcinomas with a PAX8-PPAR(gamma) fusion oncogene.

11 July 2018

1 reference

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HMGA2 mRNA expression correlates with the malignant phenotype in human thyroid neoplasias.

11 July 2018

1 reference

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Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

24 September 2018

1 reference

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Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus

24 September 2018

1 reference

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Identification of an invasion-inducing gene, Tiam-1, that encodes a protein with homology to GDP-GTP exchangers for Rho-like proteins

24 September 2018

1 reference

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24 September 2018

Identifiers

DOI

10.1038/NATURE15740

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26605532 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 March 2020

0 references

1 reference

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1 March 2020

PubMed publication ID

26605532

1 reference

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