Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes (Q35840700)

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31 December 2019

title

Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes (English)

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31 December 2019

1 reference

11

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31 December 2019

Alvaro Rada-Iglesias

1

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31 December 2019

Stefan Enroth

2

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31 December 2019

Adam Ameur

3

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31 December 2019

Christof Koch

4

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31 December 2019

Patricia Respuela

6

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31 December 2019

13

Claes Wadelius

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31 December 2019

author name string

Gayle K Clelland

5

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31 December 2019

Sarah Wilcox

7

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31 December 2019

Oliver M Dovey

8

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31 December 2019

Peter D Ellis

9

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31 December 2019

Cordelia F Langford

10

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Jan Komorowski

12

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publication date

1 June 2007

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31 December 2019

volume

17

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issue

6

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31 December 2019

page(s)

708-719

1 reference

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Primary and compensatory roles for RB family members at cell cycle gene promoters that are deacetylated and downregulated in doxorubicin-induced senescence of breast cancer cells

31 December 2019

cites work

1 reference

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11 July 2018

The LCB Data Warehouse

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Coordinated changes of histone modifications and HDAC mobilization regulate the induction of MHC class II genes by Trichostatin A.

11 July 2018

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Rapid alteration of microRNA levels by histone deacetylase inhibition

11 July 2018

1 reference

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Microarray analysis of butyrate regulated genes in colonic epithelial cells

11 July 2018

1 reference

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Control of transcription through intragenic patterns of nucleosome composition

11 July 2018

1 reference

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DNA methylation and gene silencing in cancer

11 July 2018

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Dietary HDAC inhibitors: time to rethink weak ligands in cancer chemoprevention?

11 July 2018

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Dynamic acetylation of all lysine 4-methylated histone H3 in the mouse nucleus: analysis at c-fos and c-jun

11 July 2018

1 reference

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Nuclear levels and patterns of histone H3 modification and HP1 proteins after inhibition of histone deacetylases.

11 July 2018

1 reference

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Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays

11 July 2018

1 reference

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The nuclear-envelope protein and transcriptional repressor LAP2beta interacts with HDAC3 at the nuclear periphery, and induces histone H4 deacetylation

11 July 2018

1 reference

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Genome-wide map of nucleosome acetylation and methylation in yeast

11 July 2018

1 reference

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Gene expression profiling in response to the histone deacetylase inhibitor BL1521 in neuroblastoma

11 July 2018

1 reference

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Sodium butyrate sensitizes human glioma cells to TRAIL-mediated apoptosis through inhibition of Cdc2 and the subsequent downregulation of survivin and XIAP.

11 July 2018

1 reference

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A high-resolution map of active promoters in the human genome

11 July 2018

1 reference

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Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF

11 July 2018

1 reference

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The effects of histone deacetylase inhibitors on heterochromatin: implications for anticancer therapy?

11 July 2018

1 reference

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Multiple mechanisms induce transcriptional silencing of a subset of genes, including oestrogen receptor alpha, in response to deacetylase inhibition by valproic acid and trichostatin A.

11 July 2018

1 reference

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Modulation of translation factor's gene expression by histone deacetylase inhibitors in breast cancer cells.

11 July 2018

1 reference

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Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer

11 July 2018

1 reference

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Identification and functional significance of genes regulated by structurally different histone deacetylase inhibitors

11 July 2018

1 reference

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Cyclooxygenase-2 regulation in colon cancer cells: modulation of RNA polymerase II elongation by histone deacetylase inhibitors.

11 July 2018

1 reference

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Histone deacetylase inhibitors down-regulate bcl-2 expression and induce apoptosis in t(14;18) lymphomas

11 July 2018

1 reference

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Genomic maps and comparative analysis of histone modifications in human and mouse

11 July 2018

1 reference

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Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation

11 July 2018

1 reference

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The paradox of functional heterochromatin

11 July 2018

1 reference

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Akt and 14-3-3eta regulate Miz1 to control cell-cycle arrest after DNA damage

11 July 2018

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The ENCODE (ENCyclopedia Of DNA Elements) Project

11 July 2018

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Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo

11 July 2018

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Histone deacetylase inhibitors: understanding a new wave of anticancer agents

11 July 2018

1 reference

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Histone deacetylase inhibitors regulate p21WAF1 gene expression at the post-transcriptional level in HepG2 cells

11 July 2018

1 reference

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Sodium butyrate induces apoptosis in human hepatoma cells by a mitochondria/caspase pathway, associated with degradation of beta-catenin, pRb and Bcl-XL.

11 July 2018

1 reference

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The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote

11 July 2018

1 reference

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Histone-deacetylase inhibitors for the treatment of cancer.

11 July 2018

1 reference

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Diverse and specific gene expression responses to stresses in cultured human cells

11 July 2018

1 reference

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SRC proximal and core promoter elements dictate TAF1 dependence and transcriptional repression by histone deacetylase inhibitors

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Inhibition of histone deacetylase activity by butyrate

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

The RNA polymerase II core promoter

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Butyrate induced Caco-2 cell apoptosis is mediated via the mitochondrial pathway

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Host cell factor-1 interacts with and antagonizes transactivation by the cell cycle regulatory factor Miz-1

11 July 2018

1 reference

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Worms gang up on bacteria

11 July 2018

1 reference

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A genomic screen for genes upregulated by demethylation and histone deacetylase inhibition in human colorectal cancer

11 July 2018

1 reference

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E2F mediates cell cycle-dependent transcriptional repression in vivo by recruitment of an HDAC1/mSin3B corepressor complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Histones H3/H4 form a tight complex with the inner nuclear membrane protein LBR and heterochromatin protein 1

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Regulation of transcription factor YY1 by acetylation and deacetylation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Reversible disruption of pericentric heterochromatin and centromere function by inhibiting deacetylases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Histone deacetylase inhibitor selectively induces p21WAF1 expression and gene-associated histone acetylation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Acetylation regulates transcription factor activity at multiple levels

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Different functional domains of TAFII250 modulate expression of distinct subsets of mammalian genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Requirement for TAF(II)250 acetyltransferase activity in cell cycle progression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Nuclear organization of mammalian genomes. Polar chromosome territories build up functionally distinct higher order compartments

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Histone acetylation and transcriptional regulatory mechanisms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

The TAF(II)250 subunit of TFIID has histone acetyltransferase activity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Sodium butyrate causes an increase in the block to transcriptional elongation in the c-myc gene in SW837 rectal carcinoma cells.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Identification of a novel nuclear protein synthesized in growth-arrested human hepatoblastoma HepG2 cells

11 July 2018

1 reference

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Pocket protein complexes are recruited to distinct targets in quiescent and proliferating cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Histone acetylation regulates both transcription initiation and elongation of hsp22 gene in Drosophila

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Evidence for nucleosome depletion at active regulatory regions genome-wide

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

The ubiquitous and tissue specific promoters of the human SRC gene are repressed by inhibitors of histone deacetylases

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Activation of p21(WAF1/Cip1) transcription through Sp1 sites by histone deacetylase inhibitor apicidin: involvement of protein kinase C.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Perinuclear localization of chromatin facilitates transcriptional silencing

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1891332

Three-dimensional arrangements of centromeres and telomeres in nuclei of human and murine lymphocytes

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17567991

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Direct inhibition of the expression of cyclin D1 gene by sodium butyrate

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17567991

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The fundamental role of epigenetic events in cancer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17567991

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.5540007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17567991 AND SRC:MED&resulttype=core&format=json

31 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17567991 AND SRC:MED&resulttype=core&format=json

31 December 2019

PubMed publication ID

17567991

1 reference