Vibrio cholerae strain typing and phylogeny study based on simple sequence repeats (Q35690624)

9 August 2017

title

Vibrio cholerae strain typing and phylogeny study based on simple sequence repeats (English)

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9 August 2017

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10

Yechezkel Kashi

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9 August 2017

Yael Danin-Poleg

1

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9 August 2017

Lyora A Cohen

2

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9 August 2017

Hanan Gancz

3

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9 August 2017

Yoav Y Broza

4

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9 August 2017

Hanoh Goldshmidt

5

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9 August 2017

Elinor Malul

6

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9 August 2017

Lea Valinsky

7

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9 August 2017

Larisa Lerner

8

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9 August 2017

Meir Broza

9

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9 August 2017

language of work or name

English

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publication date

20 December 2006

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Journal of Clinical Microbiology

9 August 2017

published in

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9 August 2017

volume

45

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9 August 2017

issue

3

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9 August 2017

page(s)

736-746

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Simple sequence repeats as advantageous mutators in evolution

9 August 2017

cites work

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12 July 2018

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Microsatellite instability regulates transcription factor binding and gene expression

12 July 2018

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Seasonal epidemics of cholera inversely correlate with the prevalence of environmental cholera phages.

12 July 2018

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Multilocus variable-number tandem-repeat polymorphism among Brazilian Enterococcus faecalis strains

12 July 2018

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Evolutionary genetic analysis of the emergence of epidemic Vibrio cholerae isolates on the basis of comparative nucleotide sequence analysis and multilocus virulence gene profiles.

12 July 2018

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Multiple-locus variable-number tandem repeat analysis, a novel typing scheme to study the genetic relatedness and epidemiology of Enterococcus faecium isolates

12 July 2018

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12 July 2018

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12 July 2018

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Phylogeny and strain typing of Escherichia coli, inferred from variation at mononucleotide repeat loci

12 July 2018

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Genetic diversity and virulence potential of environmental Vibrio cholerae population in a cholera-endemic area

12 July 2018

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12 July 2018

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12 July 2018

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Multi-locus sequence typing: a tool for global epidemiology

12 July 2018

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Molecular epidemiology of O139 Vibrio cholerae: mutation, lateral gene transfer, and founder flush

12 July 2018

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Multilocus sequence typing has better discriminatory ability for typing Vibrio cholerae than does pulsed-field gel electrophoresis and provides a measure of phylogenetic relatedness

12 July 2018

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GapCoder automates the use of indel characters in phylogenetic analysis

12 July 2018

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Comparative genomic analyses of the vibrio pathogenicity island and cholera toxin prophage regions in nonepidemic serogroup strains of Vibrio cholerae

12 July 2018

1 reference

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Development of a multilocus sequence typing method for analysis of Listeria monocytogenes clones

12 July 2018

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Multilocus sequence typing reveals a lack of diversity among Escherichia coli O157:H7 isolates that are distinct by pulsed-field gel electrophoresis

12 July 2018

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Strain typing of Borrelia burgdorferi, Borrelia afzelii, and Borrelia garinii by using multiple-locus variable-number tandem repeat analysis

12 July 2018

1 reference

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Effects of global climate on infectious disease: the cholera model

12 July 2018

1 reference

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Nucleotide sequence-based typing of bacteria and the impact of automation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Genomic profiles of clinical and environmental isolates of Vibrio cholerae O1 in cholera-endemic areas of Bangladesh

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Rational design of DNA sequence-based strategies for subtyping Listeria monocytogenes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Subtyping of bacterial foodborne pathogens.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Allelic diversity and population structure in Vibrio cholerae O139 Bengal based on nucleotide sequence analysis

12 July 2018

1 reference

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MEGA2: molecular evolutionary genetics analysis software

12 July 2018

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Clinical and environmental isolates of Vibrio cholerae serogroup O141 carry the CTX phage and the genes encoding the toxin-coregulated pili

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome

12 July 2018

1 reference

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Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Genotypes associated with virulence in environmental isolates of Vibrio cholerae

12 July 2018

1 reference

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Molecular analysis of Vibrio cholerae O1, O139, non-O1, and non-O139 strains: clonal relationships between clinical and environmental isolates

12 July 2018

1 reference

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CTX prophages in classical biotype Vibrio cholerae: functional phage genes but dysfunctional phage genomes

12 July 2018

1 reference

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Rapid method for species-specific identification of Vibrio cholerae using primers targeted to the gene of outer membrane protein OmpW

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Genetic diversity of clinical and environmental isolates of Vibrio cholerae determined by amplified fragment length polymorphism fingerprinting.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Pulsed-field gel electrophoresis-based molecular comparison of vibrio cholerae O1 isolates from domestic and imported cases of cholera in Japan

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Principles and applications of methods for DNA-based typing of microbial organisms

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Evolutionary relationships of pathogenic clones of Vibrio cholerae by sequence analysis of four housekeeping genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Genetic diversity and population structure of Vibrio cholerae.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Multiple sequence alignment with Clustal X

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Short-sequence DNA repeats in prokaryotic genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Abundant microsatellite polymorphism in Saccharomyces cerevisiae , and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae , result from strong mutation pressures and a variety of selective forces

12 July 2018

1 reference

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Variable number of tandem repeats in clinical strains of Haemophilus influenzae

12 July 2018

1 reference

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Simple sequence repeats as a source of quantitative genetic variation

12 July 2018

1 reference

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SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Global climate and infectious disease: the cholera paradigm

12 July 2018

1 reference

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DNA fingerprinting of Vibrio cholerae strains with a novel insertion sequence element: a tool to identify epidemic strains.

12 July 2018

1 reference

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Long, polymorphic microsatellites in simple organisms.

12 July 2018

1 reference

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Adaptive evolution of highly mutable loci in pathogenic bacteria

12 July 2018

1 reference

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Molecular epidemiologic analysis of Vibrio cholerae O1 isolates by pulsed-field gel electrophoresis

12 July 2018

1 reference

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Synthesis of cholera toxin is positively regulated at the transcriptional level by toxR

12 July 2018

1 reference

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Towards the definition of pathogenic microbe

12 July 2018

1 reference

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Amplified intergenic locus polymorphism as a basis for bacterial typing of Listeria spp. and Escherichia coli

25 September 2018

1 reference

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Adult non-biting midges: possible windborne carriers of Vibrio cholerae non-O1 non-O139.

25 September 2018

1 reference

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Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing.

25 September 2018

1 reference

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Molecular typing of epidemic and nonepidemic Vibrio cholerae isolates and differentiation of V. cholerae and V. mimicus isolates by PCR-single-strand conformation polymorphism analysis.

25 September 2018

1 reference

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Array-based binary analysis for bacterial typing.

25 September 2018

1 reference

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Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Evaluation of a RAPD-based typing scheme in a molecular epidemiology study of Vibrio cholerae O1, Brazil

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Molecular-genetic peculiarities of classical biotype Vibrio cholerae, the etiological agent of the last outbreak Asiatic cholera in Russia.

25 September 2018

1 reference

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Chironomid egg masses as a natural reservoir of Vibrio cholerae non-O1 and non-O139 in freshwater habitats

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

A PCR Method Based on 16S rRNA Sequence for Simultaneous Detection of the Genus Listeria and the Species Listeria monocytogenes in Food Products

25 September 2018

1 reference

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Variable tandem repeat VcA of Vibrio cholerae

25 September 2018

1 reference

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Pathogen reservoirs. Chironomid egg masses and Vibrio cholerae

25 September 2018

1 reference

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The microsatellites of Escherichia coli: rapidly evolving repetitive DNAs in a non-pathogenic prokaryote

25 September 2018

1 reference

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Diversity in the arrangement of the CTX prophages in classical strains of Vibrio cholerae O1.

25 September 2018

1 reference

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DNA microsatellites: agents of evolution?

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

23 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1829105

Multilocus sequence typing--what is resolved?

23 October 2018

1 reference

12 December 2020

Duplication and amplification of toxin genes in Vibrio cholerae

1 reference

12 December 2020

Emergence of novel strain of Vibrio cholerae with epidemic potential in southern and eastern India

1 reference

12 December 2020

Typing Listeria monocytogenes: a comparison of random amplification of polymorphic DNA with 5 other methods

1 reference

12 December 2020

Genetic footprint on the ToxR-binding site in the promoter for cholera toxin

1 reference

12 December 2020

Molecular diversity in Bacillus anthracis

1 reference

12 December 2020

Identifiers

DOI

10.1128/JCM.01895-06

1 reference

9 August 2017

1 reference

9 August 2017

1 reference