Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments (Q35671381)

9 August 2017

title

Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments (English)

1 reference

9 August 2017

1 reference

Hong Cai

1

1 reference

9 August 2017

Timothy G Lilburn

2

1 reference

9 August 2017

Changjin Hong

3

1 reference

9 August 2017

Jianying Gu

4

1 reference

9 August 2017

Rui Kuang

5

1 reference

9 August 2017

Yufeng Wang

6

1 reference

9 August 2017

publication date

11 June 2015

1 reference

9 August 2017

1 reference

9 August 2017

volume

9 Suppl 4

1 reference

9 August 2017

page(s)

S1

1 reference

describes a project that uses

9 August 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Global profiling of proteolysis during rupture of Plasmodium falciparum from the host erythrocyte

12 July 2018

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Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network.

12 July 2018

1 reference

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A plant-like kinase in Plasmodium falciparum regulates parasite egress from erythrocytes

12 July 2018

1 reference

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Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum

12 July 2018

1 reference

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Targeting the Plasmodium ubiquitin/proteasome system with anti-malarial compounds: promises for the future

12 July 2018

1 reference

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Protein export marks the early phase of gametocytogenesis of the human malaria parasite Plasmodium falciparum

12 July 2018

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New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq

12 July 2018

1 reference

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Nucleosome landscape and control of transcription in the human malaria parasite

12 July 2018

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12 July 2018

1 reference

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The emerging complexity of protein ubiquitination

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

The plasmodium receptor for activated C kinase protein inhibits Ca(2 ) signaling in mammalian cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

A Plasmodium falciparum FcB1-schizont-EST collection providing clues to schizont specific gene structure and polymorphism

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Sir2 paralogues cooperate to regulate virulence genes and antigenic variation in Plasmodium falciparum

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Use of high-density tiling microarrays to identify mutations globally and elucidate mechanisms of drug resistance in Plasmodium falciparum

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

A new graph-based method for pairwise global network alignment

12 July 2018

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PfEMP1: an antigen that plays a key role in the pathogenicity and immune evasion of the malaria parasite Plasmodium falciparum

12 July 2018

1 reference

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Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity

12 July 2018

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The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites

12 July 2018

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12 July 2018

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Comparative genomics of the neglected human malaria parasite Plasmodium vivax

12 July 2018

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Mechanisms of pathogenesis and the evolution of parasite virulence

12 July 2018

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A combined transcriptome and proteome survey of malaria parasite liver stages

12 July 2018

1 reference

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Bipolar, Dual Plasmodium falciparum helicase 45 expressed in the intraerythrocytic developmental cycle is required for parasite growth

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Chaperoning a cellular upheaval in malaria: heat shock proteins in Plasmodium falciparum.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Isoprenoid biosynthesis of the apicoplast as drug target

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Regulation of sexual development of Plasmodium by translational repression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Modeling cellular machinery through biological network comparison

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

The Plasmodium protein network diverges from those of other eukaryotes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

A protein interaction network of the malaria parasite Plasmodium falciparum

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Profile-based string kernels for remote homology detection and motif extraction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Conserved patterns of protein interaction in multiple species

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Proteomics approach reveals novel proteins on the surface of malaria-infected erythrocytes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

PathBLAST: a tool for alignment of protein interaction networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Plasmodium falciparum histone acetyltransferase, a yeast GCN5 homologue involved in chromatin remodeling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Network biology: understanding the cell's functional organization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

The COG database: an updated version includes eukaryotes

12 July 2018

1 reference

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Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Discovery of gene function by expression profiling of the malaria parasite life cycle

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Multiple transporters associated with malaria parasite responses to chloroquine and quinine

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Data-mining approaches reveal hidden families of proteases in the genome of malaria parasite

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

A proteomic view of the Plasmodium falciparum life cycle

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Genome sequence of the human malaria parasite Plasmodium falciparum

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

12 July 2018

1 reference

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Global kinomic and phospho-proteomic analyses of the human malaria parasite Plasmodium falciparum

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Genome wide identification of Plasmodium falciparum helicases: a comparison with human host

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

TORQUE: topology-free querying of protein interaction networks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Selection of yeast strains with enhanced expression of Plasmodium falciparum proteins

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Global alignment of multiple protein interaction networks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Computing topological parameters of biological networks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Alignment of molecular networks by integer quadratic programming

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Detecting conserved interaction patterns in biological networks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Progress in in silico functional genomics: the malaria Metabolic Pathways database

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Systematic identification of functional orthologs based on protein network comparison

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Heterochromatin silencing and locus repositioning linked to regulation of virulence genes in Plasmodium falciparum

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474416

Graph kernels for disease outcome prediction from protein-protein interaction networks

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26100579

12 December 2020

inferred from PubMed ID database lookup

Plasmodium falciparum metabolic pathways (MPMP) project upgraded with a database of subcellular locations of gene products

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26100579

12 December 2020

inferred from PubMed ID database lookup

Adaptation to the fitness costs of antibiotic resistance inEscherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26100579

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1752-0509-9-S4-S1

1 reference

journals/bmcsb/CaiLHGKW15

9 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

9 August 2017

1 reference