NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation (Q35616770)

9 August 2017

title

NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation (English)

1 reference

9 August 2017

1 reference

5

Elhanan Borenstein

1 reference

9 August 2017

4

Shiri Freilich

1 reference

9 August 2017

1

Roie Levy

1 reference

9 August 2017

Rogan Carr

2

1 reference

9 August 2017

Anat Kreimer

series ordinal

3

1 reference

9 August 2017

publication date

17 May 2015

1 reference

9 August 2017

1 reference

9 August 2017

volume

16

1 reference

9 August 2017

page(s)

164

1 reference

Creative Commons Attribution 4.0 International

9 August 2017

copyright license

start time

17 May 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Emergent biosynthetic capacity in simple microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Circuitry and dynamics of human transcription factor regulatory networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Reverse Ecology: from systems to environments and back

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Microbial co-occurrence relationships in the human microbiome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Systems-biology approaches for predicting genomic evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Multispecies communities: interspecies interactions influence growth on saliva as sole nutritional source

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Environments that induce synthetic microbial ecosystems

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Systems approaches to microbial communities and their functioning.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

A global network of coexisting microbes from environmental and whole-genome sequence data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

The large-scale organization of the bacterial network of ecological co-occurrence interactions.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Metabolic-network-driven analysis of bacterial ecological strategies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Topological signatures of species interactions in metabolic networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Network-based approaches for linking metabolism with environment

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Large-scale reconstruction and phylogenetic analysis of metabolic environments

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

The evolution of modularity in bacterial metabolic networks.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Environmental variability and modularity of bacterial metabolic networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Large-scale identification of protein-protein interaction of Escherichia coli K-12

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

A cross species comparison of metabolic network functions.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Regulatory on/off minimization of metabolic flux changes after genetic perturbations

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Analysis of optimality in natural and perturbed metabolic networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Network motifs: simple building blocks of complex networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

KEGG: kyoto encyclopedia of genes and genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Ecology drives a global network of gene exchange connecting the human microbiome

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Receptor cross-talk in angiogenesis: mapping environmental cues to cell phenotype using a stochastic, Boolean signaling network model

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Biosynthetic potentials from species-specific metabolic networks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Expanding metabolic networks: scopes of compounds, robustness, and evolution

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4434858

Inferring the transcriptional network of Bacillus subtilis

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25980407

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Metabolic synergy: increasing biosynthetic capabilities by network cooperation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25980407

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-015-0588-Y

1 reference

journals/bmcbi/LevyCKFB15

9 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1035633625

0 references

Fatcat ID

release_xemxznsf5veldmweejnflqtkui

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/xemxznsf5veldmweejnflqtkui

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

4434858

1 reference

9 August 2017

1 reference