Online nanoflow multidimensional fractionation for high efficiency phosphopeptide analysis (Q35579649)

9 August 2017

title

Online nanoflow multidimensional fractionation for high efficiency phosphopeptide analysis (English)

1 reference

9 August 2017

Scott B Ficarro

1

1 reference

9 August 2017

Yi Zhang

2

1 reference

9 August 2017

Marlene J Carrasco-Alfonso

3

1 reference

9 August 2017

Brijesh Garg

4

1 reference

9 August 2017

Guillaume Adelmant

5

1 reference

9 August 2017

James T Webber

6

1 reference

9 August 2017

C John Luckey

7

1 reference

9 August 2017

Jarrod A Marto

8

1 reference

9 August 2017

publication date

25 July 2011

1 reference

Molecular & Cellular Proteomics

9 August 2017

published in

1 reference

9 August 2017

volume

10

1 reference

9 August 2017

issue

11

1 reference

9 August 2017

page(s)

O111.011064

1 reference

Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment

9 August 2017

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27 July 2018

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27 July 2018

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New strategies for the first-line treatment of chronic myeloid leukemia: can resistance be avoided?

27 July 2018

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27 July 2018

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Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

27 July 2018

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A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing.

27 July 2018

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Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry

27 July 2018

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27 July 2018

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A comparative study of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) versus SCX-IMAC-based methods for phosphopeptide isolation/enrichment.

27 July 2018

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Immobilized metal affinity chromatography revisited: pH/acid control toward high selectivity in phosphoproteomics

27 July 2018

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Comparison of two-dimensional fractionation techniques for shotgun proteomics

27 July 2018

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A quantitative atlas of mitotic phosphorylation

27 July 2018

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27 July 2018

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TiO(2)-based phosphoproteomic analysis of the plasma membrane and the effects of phosphatase inhibitor treatment

27 July 2018

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27 July 2018

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Phosphoproteomic analysis of human brain by calcium phosphate precipitation and mass spectrometry

27 July 2018

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27 July 2018

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A multidimensional chromatography technology for in-depth phosphoproteome analysis

27 July 2018

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Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography

27 July 2018

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Phosphoproteome of resting human platelets

27 July 2018

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SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides

27 July 2018

1 reference

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Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

27 July 2018

1 reference

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Electrostatic repulsion hydrophilic interaction chromatography for isocratic separation of charged solutes and selective isolation of phosphopeptides

27 July 2018

1 reference

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Investigating MS2/MS3 matching statistics: a model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence

27 July 2018

1 reference

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FLT3 inhibition in acute myeloid leukaemia

27 July 2018

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FLT3 mutations: biology and treatment

27 July 2018

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Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

27 July 2018

1 reference

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A probability-based approach for high-throughput protein phosphorylation analysis and site localization

27 July 2018

1 reference

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Using annotated peptide mass spectrum libraries for protein identification

27 July 2018

1 reference

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Phosphorylation of CARMA1 plays a critical role in T Cell receptor-mediated NF-kappaB activation

27 July 2018

1 reference

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CTLA-4 and PD-1 receptors inhibit T-cell activation by distinct mechanisms

27 July 2018

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Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

27 July 2018

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Automated immobilized metal affinity chromatography/nano-liquid chromatography/electrospray ionization mass spectrometry platform for profiling protein phosphorylation sites

27 July 2018

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Phosphoproteomic analysis of the developing mouse brain

27 July 2018

1 reference

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Large-scale characterization of HeLa cell nuclear phosphoproteins

27 July 2018

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A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry

27 July 2018

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27 July 2018

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The corepressor mSin3A regulates phosphorylation-induced activation, intranuclear location, and stability of AML1.

27 July 2018

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A novel SHP-1/Grb2-dependent mechanism of negative regulation of cytokine-receptor signaling: contribution of SHP-1 C-terminal tyrosines in cytokine signaling

27 July 2018

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Signal transduction pathways mediated by PECAM-1: new roles for an old molecule in platelet and vascular cell biology

27 July 2018

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27 July 2018

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Phosphoproteome analysis of capacitated human sperm. Evidence of tyrosine phosphorylation of a kinase-anchoring protein 3 and valosin-containing protein/p97 during capacitation

27 July 2018

1 reference

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The roles of FLT3 in hematopoiesis and leukemia

27 July 2018

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A molecular dissection of the repression circuitry of Ikaros

27 July 2018

1 reference

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Increased proliferation of B cells and auto-immunity in mice lacking protein kinase Cdelta

27 July 2018

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Two genetic hits (more or less) to cancer

27 July 2018

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Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Oncogenic kinase signalling

27 July 2018

1 reference

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Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Expression of DNA methyltransferases DNMT1, 3A, and 3B in normal hematopoiesis and in acute and chronic myelogenous leukemia

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

A multidimensional electrospray MS-based approach to phosphopeptide mapping

27 July 2018

1 reference

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Engagement of the human pre-B cell receptor generates a lipid raft-dependent calcium signaling complex

27 July 2018

1 reference

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Phosphoprotein associated with glycosphingolipid-enriched microdomains (PAG), a novel ubiquitously expressed transmembrane adaptor protein, binds the protein tyrosine kinase csk and is involved in regulation of T cell activation

27 July 2018

1 reference

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KEGG: kyoto encyclopedia of genes and genomes

27 July 2018

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Immobilized gallium(III) affinity chromatography of phosphopeptides

27 July 2018

1 reference

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Direct analysis of protein complexes using mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

The Croonian Lecture 1997. The phosphorylation of proteins on tyrosine: its role in cell growth and disease

27 July 2018

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Tyrosine phosphorylation of Pyk2 is selectively regulated by Fyn during TCR signaling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

The extracellular signal-regulated kinase pathway phosphorylates AML1, an acute myeloid leukemia gene product, and potentially regulates its transactivation ability

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Identification by electrospray ionization mass spectrometry of the sites of tyrosine phosphorylation induced in activated Jurkat T cells on the protein tyrosine kinase ZAP-70

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Specific recruitment of SH-PTP1 to the erythropoietin receptor causes inactivation of JAK2 and termination of proliferative signals

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Electrospray ionization mass spectrometry of phosphopeptides isolated by on-line immobilized metal-ion affinity chromatography

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

mzResults: an interactive viewer for interrogation and distribution of proteomics results.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Reversed-phase-reversed-phase liquid chromatography approach with high orthogonality for multidimensional separation of phosphopeptides

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Quantitative analysis of the human spindle phosphoproteome at distinct mitotic stages

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Phosphorylation dynamics during early differentiation of human embryonic stem cells.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Phosphoproteomic analysis of human embryonic stem cells

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Optimized Orbitrap HCD for quantitative analysis of phosphopeptides.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Analysis of oligosaccharides derived from heparin by ion-pair reversed-phase chromatography/mass spectrometry

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Hydrophilic interaction chromatography reduces the complexity of the phosphoproteome and improves global phosphopeptide isolation and detection

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

What's wrong with drug screening today

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Simultaneous quantitative analysis of metabolites using ion-pair liquid chromatography-electrospray ionization mass spectrometry.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Effect of tetraalkylammonium salts on retention of betacyanins and decarboxylated betacyanins in ion-pair reversed-phase high-performance liquid chromatography

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Sulfonium and phosphonium, new ion-pairing agents with unique selectivity towards polarizable anions

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Ion-pair reversed-phase HPLC: assay validation of sodium tanshinone IIA sulfonate in mouse plasma

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

FLT3-ITD and tyrosine kinase domain mutants induce 2 distinct phenotypes in a murine bone marrow transplantation model

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Effects of ion-pairing reagents on the electrospray signal suppression of sulphonated dyes and intermediates.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Tyrosine kinases as targets in cancer therapy - successes and failures

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Automation of nanoscale microcapillary liquid chromatography-tandem mass spectrometry with a vented column

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Tyrosine kinase oncogenes in normal hematopoiesis and hematological disease

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

An automated multidimensional protein identification technology for shotgun proteomics

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

High performance liquid chromatography-mass spectrometric analysis of sulphonated dyes and intermediates

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

A systematic approach to the analysis of protein phosphorylation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Counting antigen-specific CD8 T cells: a reevaluation of bystander activation during viral infection.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Large-scale Analysis ofin VivoPhosphorylated Membrane Proteins by Immobilized Metal Ion Affinity Chromatography and Mass Spectrometry

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226414

Retention in reversed-phase chromatography: partition or adsorption?

15 November 2018

1 reference

12 December 2020

High-performance liquid chromatography-electrospray ionization mass spectrometry of single- and double-stranded nucleic acids using monolithic capillary columns

1 reference

12 December 2020

Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions

1 reference

12 December 2020

Fully automatic separation and identification of phosphopeptides by continuous pH-gradient anion exchange online coupled with reversed-phase liquid chromatography mass spectrometry

1 reference

12 December 2020

Ethylammonium formate as an organic solvent replacement for ion-pair reversed-phase liquid chromatography

1 reference

12 December 2020

Separation of N-nitrosoamino acids by C18 reversed-phase ion-pair high-performance liquid chromatography and compatible detection by electrospray ionization mass spectrometry

1 reference

12 December 2020

Identifiers

DOI

10.1074/MCP.O111.011064

1 reference

9 August 2017

1 reference

9 August 2017

1 reference