CRF-based models of protein surfaces improve protein-protein interaction site predictions (Q35225190)

25124108

7 August 2017

title

CRF-based models of protein surfaces improve protein-protein interaction site predictions (English)

1 reference

25124108

protein-protein interaction

7 August 2017

main subject

1 reference

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

author name string

Zhijie Dong

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

Keyu Wang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

Truong Khanh Linh Dang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

Marlon Welter

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

Torsten Wierschin

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

Mario Stanke

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

Stephan Waack

8

1 reference

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3 June 2020

publication date

13 August 2014

1 reference

7 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

page(s)

277

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

Non-redundant unique interface structures as templates for modeling protein interactions

3 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Binding interface prediction by combining protein-protein docking results

13 July 2018

1 reference

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BALL--biochemical algorithms library 1.3

13 July 2018

1 reference

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APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.

13 July 2018

1 reference

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Interaction-site prediction for protein complexes: a critical assessment

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

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13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

ISIS: interaction sites identified from sequence.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Protein binding site prediction using an empirical scoring function

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

SHARP2: protein-protein interaction predictions using patch analysis.

13 July 2018

1 reference

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WHISCY: what information does surface conservation yield? Application to data-driven docking.

13 July 2018

1 reference

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Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Improving the understanding of human genetic diseases through predictions of protein structures and protein-protein interaction sites

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Prediction and confirmation of a site critical for effector regulation of RGS domain activity

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Conservation and prediction of solvent accessibility in protein families

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Interior and surface of monomeric proteins

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

PresCont: predicting protein-protein interfaces utilizing four residue properties.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics, and composition.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Protein-protein interaction site prediction based on conditional random fields

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Inferring protein-protein interacting sites using residue conservation and evolutionary information

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Prediction-based fingerprints of protein-protein interactions.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Insights into protein-protein interfaces using a Bayesian network prediction method

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

An algorithm for predicting protein-protein interaction sites: Abnormally exposed amino acid residues and secondary structure elements

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Predicting protein interaction sites from residue spatial sequence profile and evolution rate

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Exploiting sequence and structure homologs to identify protein-protein binding sites

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Statistical analysis and prediction of protein-protein interfaces

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

An evolution based classifier for prediction of protein interfaces without using protein structures

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Improved prediction of protein-protein binding sites using a support vector machines approach

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

ProMate: a structure based prediction program to identify the location of protein-protein binding sites

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Prediction of protein-protein interaction sites using support vector machines

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Predicted protein-protein interaction sites from local sequence information.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Prediction of protein--protein interaction sites in heterocomplexes with neural networks.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Prediction of protein interaction sites from sequence profile and residue neighbor list

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150965

Morphology of protein-protein interfaces.

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25124108

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifying protein-protein interfacial residues in heterocomplexes using residue conservation scores

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25124108

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-15-277

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

journals/bmcbi/DongWDGWWSW14

3 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json

3 June 2020

25124108

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124108 AND SRC:MED&resulttype=core&format=json