OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes (Q35198007)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844352 AND SRC:MED&resulttype=core&format=json

10 February 2020

title

OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes (English)

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10 February 2020

3

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10 February 2020

Daniel De Carvalho

4

1 reference

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10 February 2020

Phillippa C Taberlay

5

1 reference

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10 February 2020

Gangning Liang

6

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10 February 2020

author name string

Jueng Soo You

1

1 reference

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10 February 2020

Theresa K Kelly

2

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10 February 2020

Peter A Jones

7

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10 February 2020

language of work or name

English

0 references

publication date

15 August 2011

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

10 February 2020

published in

1 reference

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10 February 2020

volume

108

1 reference

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10 February 2020

issue

35

1 reference

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10 February 2020

page(s)

14497-14502

1 reference

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A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome

10 February 2020

cites work

1 reference

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Nucleosomes containing methylated DNA stabilize DNA methyltransferases 3A/3B and ensure faithful epigenetic inheritance

28 July 2018

1 reference

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Epigenetic control of embryonic stem cell fate

28 July 2018

1 reference

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A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

28 July 2018

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H2A.Z Maintenance during Mitosis Reveals Nucleosome Shifting on Mitotically Silenced Genes

28 July 2018

1 reference

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Gene regulation by nucleosome positioning

28 July 2018

1 reference

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DNA methylation and cellular reprogramming

28 July 2018

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Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer

28 July 2018

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An expanded Oct4 interaction network: implications for stem cell biology, development, and disease

28 July 2018

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An Oct4-centered protein interaction network in embryonic stem cells

28 July 2018

1 reference

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Concise review: isoforms of OCT4 contribute to the confusing diversity in stem cell biology

28 July 2018

1 reference

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A structural perspective on the where, how, why, and what of nucleosome positioning

28 July 2018

1 reference

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Nucleosome dynamics define transcriptional enhancers

28 July 2018

1 reference

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Chromatin remodelling during development

28 July 2018

1 reference

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DNA methylation increases nucleosome compaction and rigidity

28 July 2018

1 reference

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Rethinking how DNA methylation patterns are maintained

28 July 2018

1 reference

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28 July 2018

Epigenetics in cancer

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The logic of chromatin architecture and remodelling at promoters

28 July 2018

1 reference

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H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167525

Selective anchoring of DNA methyltransferases 3A and 3B to nucleosomes containing methylated DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167525

What controls nucleosome positions?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167525

Depletion of embryonic stem cell signature by histone deacetylase inhibitor in NCCIT cells: involvement of Nanog suppression

28 July 2018

1 reference

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KLF4 and PBX1 directly regulate NANOG expression in human embryonic stem cells

28 July 2018

1 reference

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Epigenetic reprogramming and induced pluripotency

28 July 2018

1 reference

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De novo DNA methylation promoted by G9a prevents reprogramming of embryonically silenced genes

28 July 2018

1 reference

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Genome-scale DNA methylation maps of pluripotent and differentiated cells

28 July 2018

1 reference

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Dynamic regulation of nucleosome positioning in the human genome

28 July 2018

1 reference

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Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming

28 July 2018

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DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

28 July 2018

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Stability and flexibility of epigenetic gene regulation in mammalian development

28 July 2018

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Epigenetic reprogramming of OCT4 and NANOG regulatory regions by embryonal carcinoma cell extract

28 July 2018

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Identification of DNMT1 (DNA methyltransferase 1) hypomorphs in somatic knockouts suggests an essential role for DNMT1 in cell survival

28 July 2018

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

28 July 2018

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Chromatin signatures of pluripotent cell lines

28 July 2018

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G9a-mediated irreversible epigenetic inactivation of Oct-3/4 during early embryogenesis.

28 July 2018

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The dynamics of chromatin remodeling at promoters

28 July 2018

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Reciprocal transcriptional regulation of Pou5f1 and Sox2 via the Oct4/Sox2 complex in embryonic stem cells

28 July 2018

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Chromatin inactivation precedes de novo DNA methylation during the progressive epigenetic silencing of the RASSF1A promoter

28 July 2018

1 reference

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Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9.

28 July 2018

1 reference

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Retinoic acid-induced differentiation of the developmentally pluripotent human germ cell tumor-derived cell line, NCCIT

28 July 2018

1 reference

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Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167525

Nucleosome positioning and gene regulation: advances through genomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167525

Transcriptional and epigenetic regulations of embryonic stem cells

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167525

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167525

Octamer and Sox elements are required for transcriptional cis regulation of Nanog gene expression

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167525

DNMT1 and DNMT3b cooperate to silence genes in human cancer cells

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167525

Methylation of the Hprt gene on the inactive X occurs after chromosome inactivation

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21844352

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1111309108

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844352 AND SRC:MED&resulttype=core&format=json

10 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844352 AND SRC:MED&resulttype=core&format=json

10 February 2020

PubMed publication ID

21844352

1 reference