Single-cell RNA-seq reveals dynamic paracrine control of cellular variation (Q35185544)

7 August 2017

title

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation (English)

1 reference

single cell transcriptomics

7 August 2017

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

18

1 reference

7 August 2017

22

Aviv Regev

1 reference

7 August 2017

2

Rahul Satija

0 references

Nir Hacohen

19

Nir Hacohen

0 references

Schraga Schwartz

11

Schraga Schwartz

0 references

Raktima Raychowdhury

17

Raktima Raychowdhury

1 reference

7 August 2017

Alex K Shalek

1

0 references

Jellert Gaublomme

9

Jellert T Gaublomme

1 reference

7 August 2017

4

John J Trombetta

1 reference

7 August 2017

10

Nir Yosef

1 reference

7 August 2017

21

Andrew P May

1 reference

7 August 2017

8

Rona S Gertner

1 reference

7 August 2017

5

Dave Gennert

1 reference

7 August 2017

20

Hongkun Park

1 reference

7 August 2017

16

Ruihua Ding

1 reference

7 August 2017

Joe Shuga

3

1 reference

7 August 2017

Diana Lu

6

1 reference

7 August 2017

Peilin Chen

7

1 reference

7 August 2017

Brian Fowler

12

1 reference

7 August 2017

Suzanne Weaver

13

1 reference

7 August 2017

Jing Wang

14

1 reference

7 August 2017

Xiaohui Wang

15

1 reference

7 August 2017

language of work or name

English

0 references

publication date

11 June 2014

1 reference

external data available at URL

7 August 2017

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48968

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

7 August 2017

volume

510

1 reference

7 August 2017

issue

7505

1 reference

7 August 2017

page(s)

363-369

1 reference

describes a project that uses

7 August 2017

cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

cites work

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Stochastic cytokine expression induces mixed T helper cell States

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Stochastic expression of the interferon-β gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

We are all individuals: causes and consequences of non-genetic heterogeneity in mammalian cells.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Visualising individual sequence-specific protein-DNA interactions in situ

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Single-cell quantification of IL-2 response by effector and regulatory T cells reveals critical plasticity in immune response

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Population context determines cell-to-cell variability in endocytosis and virus infection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Single-molecule approaches to stochastic gene expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

mRNA-Seq whole-transcriptome analysis of a single cell

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Characterizing heterogeneous cellular responses to perturbations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Bistability, epigenetics, and bet-hedging in bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Type I interferon in systemic lupus erythematosus and other autoimmune diseases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Quorum sensing: cell-to-cell communication in bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Statistical significance for genomewide studies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Quantitative assessment of single-cell RNA-sequencing methods.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Multi-layered stochasticity and paracrine signal propagation shape the type-I interferon response

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Highly multiplexed and strand-specific single-cell RNA 5' end sequencing

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Interplay between gene expression noise and regulatory network architecture

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Type I interferons: crucial participants in disease amplification in autoimmunity

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

A noisy paracrine signal determines the cellular NF-kappaB response to lipopolysaccharide

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Keratins and the keratinocyte activation cycle

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4193940

Type I interferons as anti-inflammatory mediators

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24919153

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE13437

1 reference

Dimensions Publication ID

7 August 2017

1048753935

0 references

Fatcat ID

release_dymof6jjp5bl7jjswr2wdpmeju

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/dymof6jjp5bl7jjswr2wdpmeju

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

4193940

1 reference

7 August 2017

1 reference