Deep sequencing and ecological characterization of gut microbial communities of diverse bumble bee species (Q35175669)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25768110 AND SRC:MED&resulttype=core&format=json

2 March 2020

title

Deep sequencing and ecological characterization of gut microbial communities of diverse bumble bee species (English)

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2 March 2020

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2

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2 March 2020

author name string

Haw Chuan Lim

series ordinal

1

1 reference

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2 March 2020

Manfredo J Seufferheld

series ordinal

3

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2 March 2020

Sydney A Cameron

series ordinal

4

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2 March 2020

language of work or name

English

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publication date

13 March 2015

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25768110 AND SRC:MED&resulttype=core&format=json

2 March 2020

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2 March 2020

volume

10

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2 March 2020

issue

3

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2 March 2020

page(s)

e0118566

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Creative Commons Attribution 4.0 International

2 March 2020

copyright license

start time

13 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

maintained by WikiProject

1 reference

Ecologically meaningful transformations for ordination of species data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

An Accurate Scalable Template-based Alignment Algorithm

13 July 2018

1 reference

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Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera)

13 July 2018

1 reference

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Genetic variability of the neogregarine Apicystis bombi, an etiological agent of an emergent bumblebee disease

13 July 2018

1 reference

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Do honeybees shape the bacterial community composition in floral nectar?

13 July 2018

1 reference

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Honey constituents up-regulate detoxification and immunity genes in the western honey bee Apis mellifera

13 July 2018

1 reference

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13 July 2018

1 reference

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Infection-induced interaction between the mosquito circulatory and immune systems

13 July 2018

1 reference

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The effect of training set on the classification of honey bee gut microbiota using the Naïve Bayesian Classifier

13 July 2018

1 reference

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Functional diversity within the simple gut microbiota of the honey bee.

13 July 2018

1 reference

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Ecological effects on gut bacterial communities in wild bumblebee colonies

13 July 2018

1 reference

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Neonicotinoid pesticide reduces bumble bee colony growth and queen production

13 July 2018

1 reference

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A common pesticide decreases foraging success and survival in honey bees

13 July 2018

1 reference

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Symbionts as major modulators of insect health: lactic acid bacteria and honeybees

13 July 2018

1 reference

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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

13 July 2018

1 reference

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Establishment of characteristic gut bacteria during development of the honeybee worker

13 July 2018

1 reference

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Socially transmitted gut microbiota protect bumble bees against an intestinal parasite

13 July 2018

1 reference

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Patterns of widespread decline in North American bumble bees

13 July 2018

1 reference

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Iridovirus and microsporidian linked to honey bee colony decline

13 July 2018

1 reference

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454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

13 July 2018

1 reference

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Comparison of 61 sequenced Escherichia coli genomes

13 July 2018

1 reference

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Why bacteria matter in animal development and evolution

13 July 2018

1 reference

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Fructobacillus tropaeoli sp. nov., a fructophilic lactic acid bacterium isolated from a flower

13 July 2018

1 reference

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Global pollinator declines: trends, impacts and drivers

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Interactions between Nosema microspores and a neonicotinoid weaken honeybees (Apis mellifera)

13 July 2018

1 reference

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American Foulbrood in honeybees and its causative agent, Paenibacillus larvae

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

T-REX: software for the processing and analysis of T-RFLP data

13 July 2018

1 reference

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The gut microbiota shapes intestinal immune responses during health and disease

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

RNAalifold: improved consensus structure prediction for RNA alignments

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

13 July 2018

1 reference

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13 July 2018

1 reference

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A metagenomic survey of microbes in honey bee colony collapse disorder

13 July 2018

1 reference

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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

13 July 2018

1 reference

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UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context

13 July 2018

1 reference

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Factors affecting the transmission of salmonella by flies: natural resistance to colonization and bacterial interference.

13 July 2018

1 reference

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Antagonistic interactions between honey bee bacterial symbionts and implications for disease

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

UniFrac: a new phylogenetic method for comparing microbial communities

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Saccharibacter floricola gen. nov., sp. nov., a novel osmophilic acetic acid bacterium isolated from pollen

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communities

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Depth distribution of microbial diversity in Mono Lake, a meromictic soda lake in California

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Can bacterial interference prevent infection?

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Parasitic mites of honey bees: life history, implications, and impact

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Lactobacillus kunkeei sp. nov.: a spoilage organism associated with grape juice fermentations

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Gut flora of Galleria mellonella suppressing ingested bacteria

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Diversity and evolutionary patterns of bacterial gut associates of corbiculate bees

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Cultivation and characterization of the gut symbionts of honey bees and bumble bees: description of Snodgrassella alvi gen. nov., sp. nov., a member of the family Neisseriaceae of the Betaproteobacteria, and Gilliamella apicola gen. nov., sp. nov....

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Gut microbiota instead of host genotype drive the specificity in the interaction of a natural host-parasite system.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Environment or kin: whence do bees obtain acidophilic bacteria?

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Bacterial Communities in Central European Bumblebees: Low Diversity and High Specificity

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

A simple and distinctive microbiota associated with honey bees and bumble bees.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Short pyrosequencing reads suffice for accurate microbial community analysis

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Widespread dispersal of the microsporidian Nosema ceranae, an emergent pathogen of the western honey bee, Apis mellifera.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Bacterial community structures in honeybee intestines and their response to two insecticidal proteins.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Diversity and phylotype consistency of bacteria in the guts of three bee species (Apoidea) at an oilseed rape field.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Bacterial diversity in worker adults of Apis mellifera capensis and Apis mellifera scutellata (Insecta: Hymenoptera) assessed using 16S rRNA sequences

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359114

Decline of bumble bees (Bombus) in the North American Midwest

27 September 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0118566

A comprehensive phylogeny of the bumble bees (Bombus)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0118566

First record of the invasive bumblebee Bombus terrestris (L.) (Hymenoptera, Apidae) in Argentina

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0118566

Rapid ecological replacement of a native bumble bee by invasive species

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0118566

Pollen manipulation and related activities and structures in bees of the family Apidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0118566

The conservation of bees: a global perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0118566

Alien parasite hitchhikes to Patagonia on invasive bumblebee

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0118566

Bacterial communities in floral nectar

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25768110

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0118566

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25768110 AND SRC:MED&resulttype=core&format=json

2 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25768110 AND SRC:MED&resulttype=core&format=json

2 March 2020

PubMed publication ID

25768110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25768110 AND SRC:MED&resulttype=core&format=json