NbIT--a new information theory-based analysis of allosteric mechanisms reveals residues that underlie function in the leucine transporter LeuT. (Q35160636)

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English	NbIT--a new information theory-based analysis of allosteric mechanisms reveals residues that underlie function in the leucine transporter LeuT.	scientific article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24785005 AND SRC:MED&resulttype=core&format=json

17 March 2020

NbIT--a new information theory-based analysis of allosteric mechanisms reveals residues that underlie function in the leucine transporter LeuT (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24785005 AND SRC:MED&resulttype=core&format=json

17 March 2020

Michael V. LeVine

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24785005 AND SRC:MED&resulttype=core&format=json

17 March 2020

Harel Weinstein

2

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17 March 2020

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Michael V LeVine

1

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Europe PubMed Central

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6 August 2017

Harel Weinstein

2

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6 August 2017

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1 May 2014

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17 March 2020

PLOS Computational Biology

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17 March 2020

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17 March 2020

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17 March 2020

e1003603

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17 March 2020

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1 May 2014

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Mechanistic picture for conformational transition of a membrane transporter at atomic resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Structural basis for action by diverse antidepressants on biogenic amine transporters

1 reference

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13 July 2018

The membrane protein LeuT in micellar systems: aggregation dynamics and detergent binding to the S2 site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Coupled global and local changes direct substrate translocation by neurotransmitter-sodium symporter ortholog LeuT.

1 reference

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1 reference

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Ligand induced conformational changes of the human serotonin transporter revealed by molecular dynamics simulations

1 reference

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13 July 2018

The cost of living in the membrane: a case study of hydrophobic mismatch for the multi-segment protein LeuT.

1 reference

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1 reference

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13 July 2018

Exploring residue component contributions to dynamical network models of allostery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Role of detergents in conformational exchange of a G protein-coupled receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Substrate binds in the S1 site of the F253A mutant of LeuT, a neurotransmitter sodium symporter homologue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Experimental conditions can obscure the second high-affinity site in LeuT.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

X-ray structures of LeuT in substrate-free outward-open and apo inward-open states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Insights into transport mechanism from LeuT engineered to transport tryptophan

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Substrate-modulated gating dynamics in a Na -coupled neurotransmitter transporter homologue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

The substrate-driven transition to an inward-facing conformation in the functional mechanism of the dopamine transporter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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Maltose-neopentyl glycol (MNG) amphiphiles for solubilization, stabilization and crystallization of membrane proteins

1 reference

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Ion/substrate-dependent conformational dynamics of a bacterial homolog of neurotransmitter:sodium symporters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Single-molecule dynamics of gating in a neurotransmitter transporter homologue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

CHARMM: the biomolecular simulation program

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Long-range coupling in an allosteric receptor revealed by mutant cycle analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Dynamical networks in tRNA:protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Binding of an octylglucoside detergent molecule in the second substrate (S2) site of LeuT establishes an inhibitor-bound conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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Location of the antidepressant binding site in the serotonin transporter: importance of Ser-438 in recognition of citalopram and tricyclic antidepressants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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A competitive inhibitor traps LeuT in an open-to-out conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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An intracellular interaction network regulates conformational transitions in the dopamine transporter.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Substrate binding and formation of an occluded state in the leucine transporter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Signal propagation in proteins and relation to equilibrium fluctuations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

13 July 2018

Antidepressant binding site in a bacterial homologue of neurotransmitter transporters

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

27 September 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006702

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1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1003603

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Network Analysis of Protein Structures Identifies Functional Residues

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PCBI.1003603

21 January 2018

Generalized correlation for biomolecular dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/24785005

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/24785005

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inferred from PubMed ID database lookup

Shedding light on protein-ligand binding by graph theory: the topological nature of allostery

1 reference

https://pubmed.ncbi.nlm.nih.gov/24785005

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based on heuristic

inferred from PubMed ID database lookup

Software news and updates. Carma: a molecular dynamics analysis program

1 reference

https://pubmed.ncbi.nlm.nih.gov/24785005

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inferred from PubMed ID database lookup

Physical nature of higher-order mutual information: intrinsic correlations and frustration

1 reference

https://pubmed.ncbi.nlm.nih.gov/24785005

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based on heuristic

inferred from PubMed ID database lookup

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10.1371/JOURNAL.PCBI.1003603

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17 March 2020

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journals/ploscb/LeVineW14

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DBLP Dataset 2021-01-02

28 January 2021

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17 March 2020

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17 March 2020

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