The ERGO genome analysis and discovery system (Q35159618)

6 August 2017

title

The ERGO genome analysis and discovery system (English)

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6 August 2017

21

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22

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10

Iain Anderson

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1

Ross Overbeek

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7

Konstantinos Liolios

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6 August 2017

Anamitra Bhattacharyya

11

object named as

Anamitra Bhattacharyya

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15

Vinayak Kapatral

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3

Theresa Walunas

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5

Gordon Pusch

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20

Michael Fonstein

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13

Warren Gardner

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17

Olga Vasieva

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6

Eugene Selkov

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9

Denis Kaznadzey

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16

Natalia Mikhailova

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6 August 2017

Niels Larsen

2

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6 August 2017

Mark D'Souza

4

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Viktor Joukov

8

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Henry Burd

12

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Paul Hanke

14

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Andrei Osterman

18

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Veronika Vonstein

19

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language of work or name

English

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publication date

1 January 2003

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6 August 2017

published in

Nucleic Acids Research

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6 August 2017

volume

31

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6 August 2017

issue

1

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6 August 2017

page(s)

164-171

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Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains

6 August 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Complete reconstitution of the human coenzyme A biosynthetic pathway via comparative genomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

The Pfam protein families database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

The Protein Information Resource: an integrated public resource of functional annotation of proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Metabolic modeling of microbial strains in silico.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Genomics: what is realistically achievable?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Genomes OnLine Database (GOLD): a monitor of genome projects world-wide

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

The COG database: new developments in phylogenetic classification of proteins from complete genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Functional analysis of gapped microbial genomes: amino acid metabolism of Thiobacillus ferrooxidans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Protein interaction maps for complete genomes based on gene fusion events

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

The use of gene clusters to infer functional coupling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Representation of function: the next step

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

The metabolic pathway collection from EMP: the enzymes and metabolic pathways database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

The PROSITE database, its status in 2002

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Ontology-based knowledge representation for bioinformatics

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Archaeal shikimate kinase, a new member of the GHMP-kinase family

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

EMBOSS: the European Molecular Biology Open Software Suite

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165577

27 September 2018

Identifiers

DOI

10.1093/NAR/GKG148

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journals/nar/OverbeekLWDPSLJKABBGHKMVOVFIK03

6 August 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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6 August 2017

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