The cis-regulatory logic of Hedgehog gradient responses: key roles for gli binding affinity, competition, and cooperativity (Q35153238)

6 August 2017

title

The cis-regulatory logic of Hedgehog gradient responses: key roles for gli binding affinity, competition, and cooperativity (English)

1 reference

6 August 2017

David S Parker

1

1 reference

6 August 2017

Michael A White

2

1 reference

6 August 2017

Andrea I Ramos

3

1 reference

6 August 2017

Barak A Cohen

4

1 reference

6 August 2017

Scott Barolo

5

1 reference

6 August 2017

publication date

7 June 2011

1 reference

6 August 2017

1 reference

6 August 2017

volume

4

1 reference

6 August 2017

issue

176

1 reference

6 August 2017

page(s)

ra38

1 reference

describes a project that uses

6 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3152249/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Precise temporal control of the eye regulatory gene Pax6 via enhancer-binding site affinity.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Deciphering a transcriptional regulatory code: modeling short-range repression in the Drosophila embryo.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Reverse-engineering a transcriptional enhancer: a case study in Drosophila

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Pattern formation in the vertebrate neural tube: a sonic hedgehog morphogen-regulated transcriptional network

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

The interpretation of morphogen gradients

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Cooperative requirement of the Gli proteins in neurogenesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Direct regulation of knot gene expression by Ultrabithorax and the evolution of cis-regulatory elements in Drosophila

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

The Hedgehog response network: sensors, switches, and routers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

On schemes of combinatorial transcription logic

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Three habits of highly effective signaling pathways: principles of transcriptional control by developmental cell signaling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Proteolysis That Is Inhibited by Hedgehog Targets Cubitus interruptus Protein to the Nucleus and Converts It to a Repressor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Genetic Transformation of Drosophila with Transposable Element Vectors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

Transcriptional activation of hedgehog target genes in Drosophila is mediated directly by the cubitus interruptus protein, a member of the GLI family of zinc finger DNA-binding proteins.

28 July 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

Hedgehog controls limb development by regulating the activities of distinct transcriptional activator and repressor forms of Cubitus interruptus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

decapentaplegic overexpression affects Drosophila wing and leg imaginal disc development and wingless expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

Hedgehog signaling regulates transcription through Gli/Ci binding sites in the wingless enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

Predicting expression patterns from regulatory sequence in Drosophila segmentation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

A model Notch response element detects Suppressor of Hairless-dependent molecular switch.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

Non-consensus GLI binding sites in Hedgehog target gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

Opposing inputs by Hedgehog and Brinker define a stripe of hairy expression in the Drosophila leg imaginal disc

21 January 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen

21 January 2018

1 reference

https://api.crossref.org/works/10.1126/SCISIGNAL.2002077

New Drosophila transgenic reporters: insulated P-element vectors expressing fast-maturing RFP.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

GFP and beta-galactosidase transformation vectors for promoter/enhancer analysis in Drosophila

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

The repressor and activator forms of Cubitus interruptus control Hedgehog target genes through common generic gli-binding sites.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

The subcellular localization and activity of Drosophila cubitus interruptus are regulated at multiple levels.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152249

The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21653228

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCISIGNAL.2002077

1 reference

6 August 2017

1 reference

6 August 2017

1 reference