Protistan microbial observatory in the Cariaco Basin, Caribbean. II. Habitat specialization. (Q35135796)

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25 January 2020

title

Protistan microbial observatory in the Cariaco Basin, Caribbean. II. Habitat specialization (English)

1 reference

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25 January 2020

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2

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25 January 2020

Gordon T Taylor

6

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25 January 2020

1

William Orsi

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25 January 2020

8

Slava Epstein

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25 January 2020

author name string

Sunok Jeon

3

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25 January 2020

Chesley Leslin

4

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25 January 2020

John Bunge

5

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25 January 2020

Ramon Varela

7

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publication date

10 March 2011

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25 January 2020

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25 January 2020

volume

5

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25 January 2020

issue

8

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page(s)

1357-1373

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Estimating the number of species with CatchAll.

25 January 2020

cites work

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Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

13 July 2018

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Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities

13 July 2018

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Seasonality and vertical structure of microbial communities in an ocean gyre

13 July 2018

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Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters

13 July 2018

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Ultrastructure and molecular phylogeny of Calkinsia aureus: cellular identity of a novel clade of deep-sea euglenozoans with epibiotic bacteria

13 July 2018

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Grazing rates and functional diversity of uncultured heterotrophic flagellates

13 July 2018

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Control of toxic marine dinoflagellate blooms by serial parasitic killers

13 July 2018

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Microbial eukaryotes in the hypersaline anoxic L'Atalante deep-sea basin

13 July 2018

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Pan-oceanic distribution of new highly diverse clades of deep-sea diplonemids

13 July 2018

1 reference

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Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata).

13 July 2018

1 reference

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A latitudinal diversity gradient in planktonic marine bacteria

13 July 2018

1 reference

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Picoeukaryotic sequences in the Sargasso sea metagenome

13 July 2018

1 reference

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Screening the Sargasso Sea metagenome for data to investigate genome evolution in Ostreococcus (Prasinophyceae, Chlorophyta).

13 July 2018

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DNA evidence for global dispersal and probable endemicity of protozoa

13 July 2018

1 reference

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Protistan diversity in the Arctic: a case of paleoclimate shaping modern biodiversity?

13 July 2018

1 reference

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Vertical distribution of picoeukaryotic diversity in the Sargasso Sea.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western North Atlantic (Sargasso Sea and Gulf Stream).

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Cellular identification of a novel uncultured marine stramenopile (MAST-12 Clade) small-subunit rRNA gene sequence from a norwegian estuary by use of fluorescence in situ hybridization-scanning electron microscopy

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Eukaryotic diversity associated with carbonates and fluid-seawater interface in Lost City hydrothermal field

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Variation in niche parameters along the diversity gradient of unicellular eukaryote assemblages

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Molecular diversity of alveolates associated with neritic north atlantic radiolarians

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Synthetic statistical approach reveals a high degree of richness of microbial eukaryotes in an anoxic water column

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Distribution and abundance of uncultured heterotrophic flagellates in the world oceans

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Evidence for geographic isolation and signs of endemism within a protistan morphospecies

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Dispersal limitations matter for microbial morphospecies

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Microeukaryote community patterns along an O2/H2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway)

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples

13 July 2018

1 reference

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Microbial biogeography: putting microorganisms on the map

13 July 2018

1 reference

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Predicting microbial species richness

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Phylogenetic position of the copepod-infesting parasite Syndinium turbo (Dinoflagellata, Syndinea).

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Predation on prokaryotes in the water column and its ecological implications

13 July 2018

1 reference

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Molecular screening of free-living microbial eukaryotes: diversity and distribution using a meta-analysis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Molecular analysis of geographic patterns of eukaryotic diversity in Antarctic soils

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Only six kingdoms of life

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Phylogenetic and ecological analysis of novel marine stramenopiles

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Environmental genome shotgun sequencing of the Sargasso Sea

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

ARB: a software environment for sequence data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean Sea).

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Significance of predation by protists in aquatic microbial food webs

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Benthic eukaryotic diversity in the Guaymas Basin hydrothermal vent environment.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Global dispersal of free-living microbial eukaryote species

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Biodiversity of terrestrial protozoa appears homogeneous across local and global spatial scales

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

The Santa Barbara Basin is a symbiosis oasis.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Base-calling of automated sequencer traces using phred. II. Error probabilities

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Bacterivory and herbivory: Key roles of phagotrophic protists in pelagic food webs

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Diversity estimates of microeukaryotes below the chemocline of the anoxic Mariager Fjord, Denmark

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

Protistan diversity estimates based on 18S rDNA from seawater incubations in the Western North Atlantic

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146276

The Ecological Role of Water-Column Microbes in the Sea

27 September 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2011.7

Environmental controls on the geographic distribution of zooplankton diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2011.7

Protist diversity: estimates of the near-imponderable

21 January 2018

1 reference

12 December 2020

Motile chemosensory behaviour of phagotrophic protists: mechanisms for and efficiency in congregating at food patches

1 reference

12 December 2020

Apparent global ubiquity of species in the protist genus Paraphysomonas

1 reference

12 December 2020

Protozoan community structure in a fractal soil environment

1 reference

12 December 2020

Inorganic nutrients, bacteria, and the microbial loop

1 reference

12 December 2020

In situ biodegradation: microbiological patterns in a contaminated aquifer

1 reference

12 December 2020

Divergent perspectives on protist species richness

1 reference

12 December 2020

Geographical patterns of micro-organismal community structure: are diatoms ubiquitously distributed across boreal streams?

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2011.7

7 January 2021

inferred from DOI database lookup

Regional occupancy in unicellular eukaryotes: a reflection of niche breadth, habitat availability or size-related dispersal capacity?

1 reference

https://api.crossref.org/works/10.1038/ISMEJ.2011.7

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/ISMEJ.2011.7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21390077 AND SRC:MED&resulttype=core&format=json

25 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21390077 AND SRC:MED&resulttype=core&format=json

25 January 2020

PubMed publication ID

21390077

1 reference