Exploiting post-transcriptional regulation to probe RNA structures in vivo via fluorescence (Q35097933)

6 August 2017

title

Exploiting post-transcriptional regulation to probe RNA structures in vivo via fluorescence (English)

1 reference

6 August 2017

8

Lydia M Contreras

1 reference

6 August 2017

Steven W Sowa

1

1 reference

6 August 2017

Jorge Vazquez-Anderson

2

1 reference

6 August 2017

Chelsea A Clark

3

1 reference

6 August 2017

Ricardo De La Peña

4

1 reference

6 August 2017

Kaitlin Dunn

5

1 reference

6 August 2017

Emily K Fung

6

1 reference

6 August 2017

Mark J Khoury

7

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6 August 2017

language of work or name

English

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publication date

21 November 2014

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6 August 2017

published in

Nucleic Acids Research

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6 August 2017

volume

43

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6 August 2017

issue

2

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6 August 2017

page(s)

e13

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Creative Commons Attribution-NonCommercial 4.0 International

6 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Folding pathways of the Tetrahymena ribozyme

9 July 2018

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An immature retroviral RNA genome resembles a kinetically trapped intermediate state

9 July 2018

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Regulatory RNAs: charming gene management styles for synthetic biology applications

9 July 2018

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On the importance of cotranscriptional RNA structure formation

9 July 2018

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The long-range P3 helix of the Tetrahymena ribozyme is disrupted during folding between the native and misfolded conformations

9 July 2018

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Understanding the transcriptome through RNA structure

9 July 2018

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Structure–Function Analysis from the Outside In: Long-Range Tertiary Contacts in RNA Exhibit Distinct Catalytic Roles

9 July 2018

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RNA folding in living cells

9 July 2018

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Genome-wide measurement of RNA secondary structure in yeast

9 July 2018

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Multiple unfolding events during native folding of the Tetrahymena group I ribozyme

9 July 2018

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Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis

9 July 2018

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Determining structures of RNA aptamers and riboswitches by X-ray crystallography

9 July 2018

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High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

9 July 2018

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DMS footprinting of structured RNAs and RNA-protein complexes

9 July 2018

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Structure and assembly of group I introns

9 July 2018

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Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice

9 July 2018

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Engineered riboregulators enable post-transcriptional control of gene expression

9 July 2018

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Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

9 July 2018

1 reference

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Two conserved structural components, A-rich bulge and P4 XJ6/7 base-triples, in activating the group I ribozymes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo

9 July 2018

1 reference

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9 July 2018

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Lead(II) as a probe for investigating RNA structure in vivo

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

Exploring the folding landscape of a structured RNA

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

Use of dimethyl sulfate to probe RNA structure in vivo

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

A preorganized active site in the crystal structure of the Tetrahymena ribozyme

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

P5abc of the Tetrahymena ribozyme consists of three functionally independent elements

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

Defining the chemical groups essential for Tetrahymena group I intron function by nucleotide analog interference mapping

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

The P9.1-P9.2 peripheral extension helps guide folding of the Tetrahymena ribozyme

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

Representation of the secondary and tertiary structure of group I introns

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

In vivo facilitation of Tetrahymena group I intron splicing in Escherichia coli pre-ribosomal RNA.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

The Tetrahymena rRNA intron self-splices in E. coli: in vivo evidence for the importance of key base-paired regions of RNA for RNA enzyme function

9 July 2018

1 reference

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Structure mapping of 5'-32P-labeled RNA with S1 nuclease

9 July 2018

1 reference

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Group II intron-ribosome association protects intron RNA from degradation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

RNA SHAPE analysis in living cells

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

NUPACK: Analysis and design of nucleic acid systems

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

The paradoxical behavior of a highly structured misfolded intermediate in RNA folding

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333371

RNA structure determination by NMR.

27 September 2018

1 reference

Self-splicing of the Tetrahymena pre-rRNA is decreased by misfolding during transcription

21 January 2018

1 reference

The Fastest Global Events in RNA Folding: Electrostatic Relaxation and Tertiary Collapse of the Tetrahymena Ribozyme

21 January 2018

1 reference

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

21 January 2018

1 reference

The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA

21 January 2018

1 reference

Kinetic intermediates in RNA folding

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25416800

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25416800

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU1191

1 reference

6 August 2017

1 reference

6 August 2017

1 reference