NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis (Q35090680)

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27 February 2020

title

NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis (English)

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27 February 2020

1

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27 February 2020

Dariusz Jan Smolinski

4

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27 February 2020

Grzegorz Brzyżek

5

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27 February 2020

Szymon Świeżewski

7

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27 February 2020

6

Artur Jarmołowski

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27 February 2020

author name string

Yanwu Guo

2

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27 February 2020

Agnieszka Kołowerzo

3

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27 February 2020

language of work or name

English

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publication date

7 January 2015

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27 February 2020

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27 February 2020

volume

34

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27 February 2020

issue

4

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27 February 2020

page(s)

544-558

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A splicing-dependent transcriptional checkpoint associated with prespliceosome formation.

27 February 2020

cites work

1 reference

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Identification of a novel component C2ORF3 in the lariat-intron complex: lack of C2ORF3 interferes with pre-mRNA splicing via intron turnover pathway

8 July 2018

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The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana

8 July 2018

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Analysis of long non-coding RNAs produced by a specialized RNA polymerase in Arabidopsis thaliana.

8 July 2018

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The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis

8 July 2018

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8 July 2018

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8 July 2018

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DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation

8 July 2018

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Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

8 July 2018

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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

8 July 2018

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The Prp19 complex is a novel transcription elongation factor required for TREX occupancy at transcribed genes.

8 July 2018

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Semiquantitative proteomic analysis of the human spliceosome via a novel two-dimensional gel electrophoresis method

8 July 2018

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Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons.

8 July 2018

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Structural basis of RNA polymerase II backtracking, arrest and reactivation

8 July 2018

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The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing

8 July 2018

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Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

8 July 2018

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Splicing-dependent RNA polymerase pausing in yeast

8 July 2018

1 reference

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Cotranscriptional exon skipping in the genotoxic stress response

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

The DEAH box ATPases Prp16 and Prp43 cooperate to proofread 5' splice site cleavage during pre-mRNA splicing

8 July 2018

1 reference

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Spliceosome discards intermediates via the DEAH box ATPase Prp43p

8 July 2018

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Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability

8 July 2018

1 reference

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Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).

8 July 2018

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Progression through the RNA polymerase II CTD cycle

8 July 2018

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Tape-Arabidopsis Sandwich - a simpler Arabidopsis protoplast isolation method

8 July 2018

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Genome-wide mapping of alternative splicing in Arabidopsis thaliana

8 July 2018

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The spliceosome: design principles of a dynamic RNP machine

8 July 2018

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TFIP11, CCNL1 and EWSR1 Protein-protein Interactions, and Their Nuclear Localization

8 July 2018

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

8 July 2018

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Spliceostatin A targets SF3b and inhibits both splicing and nuclear retention of pre-mRNA.

8 July 2018

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Protocol for the fast chromatin immunoprecipitation (ChIP) method

8 July 2018

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Characterization of STIP, a multi-domain nuclear protein, highly conserved in metazoans, and essential for embryogenesis in Caenorhabditis elegans

8 July 2018

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Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis.

8 July 2018

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An improved method for preparing Agrobacterium cells that simplifies the Arabidopsis transformation protocol

8 July 2018

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Increased level of polyploidy1, a conserved repressor of CYCLINA2 transcription, controls endoreduplication in Arabidopsis

8 July 2018

1 reference

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Inhibition of a spliceosome turnover pathway suppresses splicing defects

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Yeast ntr1/spp382 mediates prp43 function in postspliceosomes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Spliceosome disassembly catalyzed by Prp43 and its associated components Ntr1 and Ntr2.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

The human SWI/SNF subunit Brm is a regulator of alternative splicing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Structural organization and cellular localization of tuftelin-interacting protein 11 (TFIP11).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

WebLogo: A Sequence Logo Generator

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

A slow RNA polymerase II affects alternative splicing in vivo

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Disruption of base pairing between the 5' splice site and the 5' end of U1 snRNA is required for spliceosome assembly

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Site-directed mutagenesis by overlap extension using the polymerase chain reaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Sequence logos: a new way to display consensus sequences

8 July 2018

1 reference

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An efficient method for isolation of RNA from tissue cultured plant cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Herboxidiene, a new herbicidal substance from Streptomyces chromofuscus A7847. Taxonomy, fermentation, isolation, physico-chemical and biological properties

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Elongation factor-dependent transcript shortening by template-engaged RNA polymerase II.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Purification of a factor from Ehrlich ascites tumor cells specifically stimulating RNA polymerase II

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

How slow RNA polymerase II elongation favors alternative exon skipping.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

The seed dormancy defect of Arabidopsis mutants lacking the transcript elongation factor TFIIS is caused by reduced expression of the DOG1 gene.

27 September 2018

1 reference

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From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II.

27 September 2018

1 reference

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Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects

27 September 2018

1 reference

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Knock-out mutations of Arabidopsis SmD3-b induce pleotropic phenotypes through altered transcript splicing.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Transcript elongation factor TFIIS is involved in arabidopsis seed dormancy

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses

27 September 2018

1 reference

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Large-scale screening of yeast mutants for sensitivity to the IMP dehydrogenase inhibitor 6-azauracil

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Identification of SAP155 as the Target of GEX1A (Herboxidiene), an Antitumor Natural Product

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331007

Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts

8 December 2018

1 reference

12 December 2020

6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae

1 reference

12 December 2020

Promoter architecture modulates CFTR exon 9 skipping

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12 December 2020

Chromatin techniques for plant cells

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12 December 2020

Identifiers

DOI

10.15252/EMBJ.201489478

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25568310 AND SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25568310 AND SRC:MED&resulttype=core&format=json

27 February 2020

PubMed publication ID

25568310

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25568310 AND SRC:MED&resulttype=core&format=json