In vivo expression and purification of aptamer-tagged small RNA regulators (Q35000915)

5 August 2017

title

In vivo expression and purification of aptamer-tagged small RNA regulators (English)

1 reference

5 August 2017

6

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5 August 2017

5

Henning Urlaub

1 reference

5 August 2017

Nelly Said

1

1 reference

5 August 2017

Renate Rieder

series ordinal

2

1 reference

5 August 2017

Robert Hurwitz

series ordinal

3

1 reference

5 August 2017

Jochen Deckert

series ordinal

4

1 reference

5 August 2017

language of work or name

English

0 references

publication date

2 September 2009

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5 August 2017

published in

Nucleic Acids Research

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5 August 2017

volume

37

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5 August 2017

issue

20

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5 August 2017

page(s)

e133

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Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

5 August 2017

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Small RNA binding to 5' mRNA coding region inhibits translational initiation

8 July 2018

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8 July 2018

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A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles

8 July 2018

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8 July 2018

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A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites

8 July 2018

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A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Improved native affinity purification of RNA.

8 July 2018

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Silver- and Coomassie-staining protocols: detection limits and compatibility with ESI MS.

8 July 2018

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RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation

8 July 2018

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SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

8 July 2018

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Isolation of specific RNA-binding proteins using the streptomycin-binding RNA aptamer

8 July 2018

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RNA visualization in live bacterial cells using fluorescent protein complementation

8 July 2018

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Mechanism of RNA silencing by Hfq-binding small RNAs

8 July 2018

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Small RNAs controlling iron metabolism

8 July 2018

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Identification of small RNAs in diverse bacterial species

8 July 2018

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CsrB sRNA family: sequestration of RNA-binding regulatory proteins

8 July 2018

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The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium

8 July 2018

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Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins

8 July 2018

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Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions

8 July 2018

1 reference

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The role of RNAs in the regulation of virulence-gene expression.

8 July 2018

1 reference

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Sex-lethal imparts a sex-specific function to UNR by recruiting it to the msl-2 mRNA 3' UTR: translational repression for dosage compensation

8 July 2018

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Bacterial small RNA regulators

8 July 2018

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Identification of 40LoVe, a Xenopus hnRNP D family protein involved in localizing a TGF-beta-related mRNA during oogenesis

8 July 2018

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RNA dynamics in live Escherichia coli cells

8 July 2018

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The bacterial Sm-like protein Hfq: a key player in RNA transactions

8 July 2018

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Global analysis of small RNA and mRNA targets of Hfq

8 July 2018

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A survey of small RNA-encoding genes in Escherichia coli

8 July 2018

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A high-capacity RNA affinity column for the purification of human IRP1 and IRP2 overexpressed in Pichia pastoris

8 July 2018

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Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method

8 July 2018

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Purification and electron microscopic visualization of functional human spliceosomes

8 July 2018

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Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Identification of novel small RNAs using comparative genomics and microarrays

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Streptavidin aptamers: affinity tags for the study of RNAs and ribonucleoproteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

6S RNA regulates E. coli RNA polymerase activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Functional association of U2 snRNP with the ATP-independent spliceosomal complex E

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Purification of telomerase from Euplotes aediculatus: requirement of a primer 3' overhang

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Kinetic and thermodynamic analysis of the interaction between TRAP (trp RNA-binding attenuation protein) of Bacillus subtilis and trp leader RNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Aromatic-dependent Salmonella typhimurium are non-virulent and effective as live vaccines

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

An ordered pathway of snRNP binding during mammalian pre-mRNA splicing complex assembly

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Antisense probing of the human U4/U6 snRNP with biotinylated 2'-OMe RNA oligonucleotides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Purification of RNA and RNA-protein complexes by an R17 coat protein affinity method

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Analysis by high-resolution two-dimensional electrophoresis of differentiation-dependent alterations in cytosolic protein pattern of HL-60 leukemic cells.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Isolation of small RNA-binding proteins from E. coli: evidence for frequent interaction of RNAs with RNA polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Isolation of an active step I spliceosome and composition of its RNP core

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Indole signalling contributes to the stable maintenance of Escherichia coli multicopy plasmids

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Affinity purification of eukaryotic 48S initiation complexes.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Isolation of an mRNA-binding protein involved in C-to-U editing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Kinetic and thermodynamic analysis of RNA-protein interactions in the RNase P holoenzyme from Escherichia coli

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

Mutants of the bacteriophage MS2 coat protein that alter its cooperative binding to RNA.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777422

A highly salt-dependent enthalpy change for Escherichia coli SSB protein-nucleic acid binding due to ion-protein interactions

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19726584

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Affinity chromatography of splicing complexes: U2, U5, and U4 U6 small nuclear ribonucleoprotein particles in the spliceosome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19726584

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Purification of functional RNA-protein complexes using MS2-MBP

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19726584

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP719

1 reference

5 August 2017

1 reference

5 August 2017

1 reference