Inferring HIV Escape Rates from Multi-Locus Genotype Data (Q34985572)

5 August 2017

title

Inferring HIV Escape Rates from Multi-Locus Genotype Data (English)

1 reference

5 August 2017

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Richard A Neher

3

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Alan S. Perelson

series ordinal

2

object named as

Alan S Perelson

1 reference

5 August 2017

Taylor A Kessinger

1

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5 August 2017

publication date

3 September 2013

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5 August 2017

published in

Frontiers in Immunology

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5 August 2017

volume

4

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5 August 2017

page(s)

252

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Mathematical modeling of escape of HIV from cytotoxic T lymphocyte responses.

5 August 2017

cites work

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8 July 2018

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Vertical T cell immunodominance and epitope entropy determine HIV-1 escape

8 July 2018

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Stochastic effects are important in intrahost HIV evolution even when viral loads are high

8 July 2018

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Ultrasensitive allele-specific PCR reveals rare preexisting drug-resistant variants and a large replicating virus population in macaques infected with a simian immunodeficiency virus containing human immunodeficiency virus reverse transcriptase

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Fitness costs and diversity of the cytotoxic T lymphocyte (CTL) response determine the rate of CTL escape during acute and chronic phases of HIV infection

8 July 2018

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Majority of CD4 T cells from peripheral blood of HIV-1-infected individuals contain only one HIV DNA molecule

8 July 2018

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Genetic Draft and Quasi-Neutrality in Large Facultatively Sexual Populations

8 July 2018

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Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection

8 July 2018

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

8 July 2018

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Recombination rate and selection strength in HIV intra-patient evolution

8 July 2018

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The immune response during acute HIV-1 infection: clues for vaccine development

8 July 2018

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Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

8 July 2018

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The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

8 July 2018

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The rate at which asexual populations cross fitness valleys

8 July 2018

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8 July 2018

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Estimating the impact of vaccination on acute simian-human immunodeficiency virus/simian immunodeficiency virus infections

8 July 2018

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Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

8 July 2018

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CD4 target cell availability determines the dynamics of immune escape and reversion in vivo

8 July 2018

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Beneficial mutation selection balance and the effect of linkage on positive selection

8 July 2018

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8 July 2018

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Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution

8 July 2018

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Estimating Costs and Benefits of CTL Escape Mutations in SIV/HIV Infection

8 July 2018

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8 July 2018

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Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost

8 July 2018

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Dynamics of HIV-1 recombination in its natural target cells

8 July 2018

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A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo

8 July 2018

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8 July 2018

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Dynamics of HIV-1 and CD4 lymphocytes in vivo

8 July 2018

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Quantitative image analysis of HIV-1 infection in lymphoid tissue

8 July 2018

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HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time

8 July 2018

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HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy

8 July 2018

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Modeling and optimization of populations subject to time-dependent mutation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760075

Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760075

Procedures for reliable estimation of viral fitness from time-series data.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760075

26 October 2018

Identifiers

DOI

10.3389/FIMMU.2013.00252

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5 August 2017

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1 reference

5 August 2017

1 reference