Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. (Q34910930)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19572557 AND SRC:MED&resulttype=core&format=json

1 February 2020

title

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean (English)

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1 February 2020

6

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1 February 2020

7

David R Goodlett

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1 February 2020

2

Alexander Scherl

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1 February 2020

author name string

Alexandre Panchaud

1

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1 February 2020

Scott A Shaffer

3

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1 February 2020

Priska D von Haller

4

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1 February 2020

Hemantha D Kulasekara

5

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1 February 2020

language of work or name

English

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publication date

1 August 2009

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1 February 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19572557 AND SRC:MED&resulttype=core&format=json

1 February 2020

volume

81

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1 February 2020

issue

15

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1 February 2020

page(s)

6481-6488

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 February 2020

cites work

1 reference

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Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses

8 July 2018

1 reference

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A mouse plasma peptide atlas as a resource for disease proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

On the benefits of acquiring peptide fragment ions at high measured mass accuracy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Quantitative mass spectrometry in proteomics: a critical review

8 July 2018

1 reference

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High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Structural heterogeneity and environmentally regulated remodeling of Francisella tularensis subspecies novicida lipid A characterized by tandem mass spectrometry

8 July 2018

1 reference

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Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study

8 July 2018

1 reference

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Immobilized pH gradient isoelectric focusing as a first-dimension separation in shotgun proteomics

8 July 2018

1 reference

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Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Immunoassay and antibody microarray analysis of the HUPO Plasma Proteome Project reference specimens: systematic variation between sample types and calibration of mass spectrometry data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine op

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Mass spectrometry-based proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

The human plasma proteome: history, character, and diagnostic prospects

8 July 2018

1 reference

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Accurate mass multiplexed tandem mass spectrometry for high-throughput polypeptide identification from mixtures.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Direct analysis of protein complexes using mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Analysis of protein phosphorylation by hypothesis-driven multiple-stage mass spectrometry

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Approaching complete peroxisome characterization by gas-phase fractionation

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Automated identification of amino acid sequence variations in proteins by HPLC/microspray tandem mass spectrometry

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Head-to-Head Comparison of Serum Fractionation Techniques

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086478

Towards defining the urinary proteome using liquid chromatography-tandem mass spectrometry. I. Profiling an unfractionated tryptic digest

9 December 2018

1 reference

12 December 2020

A Qit-q-Tof mass spectrometer for two-dimensional tandem mass spectrometry

1 reference

12 December 2020

Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes

1 reference

12 December 2020

An Ion Funnel Interface for Improved Ion Focusing and Sensitivity Using Electrospray Ionization Mass Spectrometry

1 reference

12 December 2020

Identifiers

DOI

10.1021/AC900888S

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19572557 AND SRC:MED&resulttype=core&format=json

1 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19572557 AND SRC:MED&resulttype=core&format=json

1 February 2020

PubMed publication ID

19572557

1 reference