Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity (Q34850040)

4 August 2017

title

Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity (English)

1 reference

4 August 2017

5

1 reference

4 August 2017

Abraham Aseffa

8

0 references

author name string

Alessandra Pontiroli

1

1 reference

4 August 2017

Tanya T Khera

2

1 reference

4 August 2017

Brian B Oakley

3

1 reference

4 August 2017

Sam Mason

4

1 reference

4 August 2017

Emma R Travis

6

1 reference

4 August 2017

Girum Erenso

7

1 reference

4 August 2017

Orin Courtenay

9

1 reference

4 August 2017

Elizabeth M H Wellington

10

1 reference

4 August 2017

language of work or name

English

0 references

publication date

18 July 2013

1 reference

4 August 2017

1 reference

4 August 2017

volume

8

1 reference

4 August 2017

issue

7

1 reference

4 August 2017

page(s)

e68648

1 reference

Creative Commons Attribution 4.0 International

4 August 2017

copyright license

start time

18 July 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Species-level analysis of DNA sequence data from the NIH Human Microbiome Project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Structure, function and diversity of the healthy human microbiome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Pathogen Quantitation in Complex Matrices: A Multi-Operator Comparison of DNA Extraction Methods with a Novel Assessment of PCR Inhibition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Ovine pedomics: the first study of the ovine foot 16S rRNA-based microbiome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Nontuberculous mycobacteria: opportunistic environmental pathogens for predisposed hosts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Novel Mycobacterium tuberculosis complex pathogen, M. mungi

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

QIIME allows analysis of high-throughput community sequencing data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

A high-throughput DNA sequence aligner for microbial ecology studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

PyNAST: a flexible tool for aligning sequences to a template alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Free-living amoebae, a training field for macrophage resistance of mycobacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Influence of environmental gradients on the abundance and distribution of Mycobacterium spp. in a coastal lagoon estuary

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Surrounded by mycobacteria: nontuberculous mycobacteria in the human environment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Comparison of DNA pyrosequencing with alternative methods for identification of mycobacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Accuracy and quality of massively parallel DNA pyrosequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Mycobacterium colombiense sp. nov., a novel member of the Mycobacterium avium complex and description of MAC-X as a new ITS genetic variant

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Isolation and Identification of Environmental Mycobacteria in the Mycobacterium bovis BCG Trial Area of South India.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

UniFrac: a new phylogenetic method for comparing microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Nontuberculous mycobacterial infections: a clinical review.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Diversity of nontuberculoid Mycobacterium species in biofilms of urban and semiurban drinking water distribution systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

ARB: a software environment for sequence data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Impact of Genotypic Studies on Mycobacterial Taxonomy: the New Mycobacteria of the 1990s

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Occurrence of mycobacteria in water treatment lines and in water distribution systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Aquatic insects as a vector for Mycobacterium ulcerans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Occurrence of nontuberculous mycobacteria in environmental samples

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Epidemiology of infection by nontuberculous mycobacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Variation in protection by BCG: implications of and for heterologous immunity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715504

PCR analysis of the presence and location of Mycobacterium avium in a constructed reed bed, with implications for avian tuberculosis control.

8 July 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Humic and fulvic acids stimulate the growth of Mycobacterium avium

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Detection of nontuberculous mycobacteria from water buffalo raw milk in Brazil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Molecular detection of Mycobacterium bovis and Mycobacterium bovis BCG (Pasteur) in soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Distribution of the Mycobacterium community and polycyclic aromatic hydrocarbons (PAHs) among different size fractions of a long-term PAH-contaminated soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Occurrence and community composition of fast-growing Mycobacterium in soils contaminated with polycyclic aromatic hydrocarbons

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Real-time PCR detection of environmental mycobacteria in house dust

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Photoperiod modulates gut bacteria composition in male Siberian hamsters (Phodopus sungorus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Commercial DNA probes for mycobacteria incorrectly identify a number of less frequently encountered species

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

A seven-gene, multilocus, genus-wide approach to the phylogeny of mycobacteria using supertrees

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0068648

Environmental mycobacteria in areas of high and low tuberculosis prevalence in the Islamic Republic of Iran

21 January 2018

1 reference

12 December 2020

Environmental mycobacteria from alpine and subalpine habitats

1 reference

12 December 2020

Environmental factors affecting the occurrence of mycobacteria in brook sediments

1 reference

12 December 2020

Evidence for phylogenetic inheritance in pathogenicity of Mycobacterium

1 reference

12 December 2020

Isolation of mycobacteria from acidic forest soil samples: comparison of culture methods

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0068648

Identifiers

DOI

1 reference

4 August 2017

0 references

1 reference

4 August 2017

1 reference