Population genomics of transposable elements in Drosophila melanogaster. (Q34823735)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21172826 AND SRC:MED&resulttype=core&format=json

18 January 2020

title

Population genomics of transposable elements in Drosophila melanogaster (English)

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18 January 2020

main subject

Drosophila melanogaster

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1

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Anna-Sophie Fiston-Lavier

18 January 2020

2

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18 January 2020

Josefa González

5

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18 January 2020

author name string

Mikhail Lipatov

3

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18 January 2020

Kapa Lenkov

4

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18 January 2020

publication date

16 December 2010

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Molecular Biology and Evolution

18 January 2020

published in

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18 January 2020

volume

28

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18 January 2020

issue

5

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18 January 2020

page(s)

1633-1644

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T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data

18 January 2020

cites work

1 reference

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Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

8 July 2018

1 reference

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Molecular evolution of piRNA and transposon control pathways in Drosophila

8 July 2018

1 reference

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Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila

8 July 2018

1 reference

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The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata

8 July 2018

1 reference

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Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

8 July 2018

1 reference

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Transposable elements in gene regulation and in the evolution of vertebrate genomes

8 July 2018

1 reference

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Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

8 July 2018

1 reference

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Evolutionary dynamics of the LTR retrotransposons roo and rooA inferred from twelve complete Drosophila genomes

8 July 2018

1 reference

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The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes

8 July 2018

1 reference

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The adaptive role of transposable elements in the Drosophila genome

8 July 2018

1 reference

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Measuring the rates of spontaneous mutation from deep and large-scale polymorphism data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Molecular domestication of transposable elements: from detrimental parasites to useful host genes.

8 July 2018

1 reference

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High rate of recent transposable element-induced adaptation in Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

The effects of recombination rate on the distribution and abundance of transposable elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Losing helena: the extinction of a drosophila line-like element.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Transposable elements and the evolution of regulatory networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Long-term evolution of transposable elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

A unified classification system for eukaryotic transposable elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Sequence finishing and mapping of Drosophila melanogaster heterochromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

The Release 5.1 annotation of Drosophila melanogaster heterochromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Transposable elements and the epigenetic regulation of the genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Hybrid Dysgenesis in DROSOPHILA MELANOGASTER: A Syndrome of Aberrant Traits Including Mutation, Sterility and Male Recombination.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Genetics: Junk DNA as an evolutionary force

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Combined evidence annotation of transposable elements in genome sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Pesticide Resistance via Transposition-Mediated Adaptive Gene Truncation in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Molecular paleontology of transposable elements in the Drosophila melanogaster genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Perspective: transposable elements, parasitic DNA, and genome evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Transposon dynamics and the breeding system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Sure facts, speculations, and open questions about the evolution of transposable element copy number

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Restriction of ectopic recombination by interhomolog interactions during Saccharomyces cerevisiae meiosis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Ab initio gene finding in Drosophila genomic DNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Accumulation of transposable elements in laboratory lines of Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

LTR retrotransposons and the evolution of eukaryotic enhancers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Homology Requirements for Targeting Heterologous Sequences During P-Induced Gap Repair in Drosophila melanogaster 1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Prediction of complete gene structures in human genomic DNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

High intrinsic rate of DNA loss in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

The efficiency of meiotic recombination between dispersed sequences in Saccharomyces cerevisiae depends upon their chromosomal location.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Diverse transposable elements are mobilized in hybrid dysgenesis in Drosophila virilis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Gene disruptions using P transposable elements: an integral component of the Drosophila genome project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

The population genetics of Drosophila transposable elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Cytotype control of Drosophila P element transposition: the 66 kd protein is a repressor of transposase activity.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Integration specificity of retrotransposons and retroviruses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Chromosome rearrangement by ectopic recombination in Drosophila melanogaster: genome structure and evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

Lack of polymorphism on the Drosophila fourth chromosome resulting from selection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

8 July 2018

Transposable elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

A new look at the statistical model identification

8 July 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ337

On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ337

Mechanisms regulating the copy numbers of six LTR retrotransposons in the genome of Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ337

Drosophila melanogaster recombination rate calculator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ337

PERSPECTIVE: TRANSPOSABLE ELEMENTS, PARASITIC DNA, AND GENOME EVOLUTION

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ337

Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ337

Rapid sequence turnover at an intergenic locus in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ337

Nucleotide variation along the Drosophila melanogaster fourth chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ337

Transposable elements in inbreeding and outbreeding populations

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080135

The evolutionary dynamics of repetitive DNA in eukaryotes

26 October 2018

1 reference

https://api.crossref.org/works/10.1093/MOLBEV/MSQ337

Models of the population genetics of transposable elements

21 January 2018

1 reference

12 December 2020

The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. II. Inferences on the nature of selection against elements

1 reference

12 December 2020

Transposable Element Dynamics in Two Sibling Species: Drosophila Melanogaster and Drosophila Simulans

1 reference

12 December 2020

A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster

1 reference

12 December 2020

Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes

1 reference

12 December 2020

On the role of unequal exchange in the containment of transposable element copy number

1 reference

12 December 2020

Population dynamics of the copia, mdg1, mdg3, gypsy, and P transposable elements in a natural population of Drosophila melanogaster

1 reference

12 December 2020

Identifiers

DOI

10.1093/MOLBEV/MSQ337

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21172826 AND SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21172826 AND SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

21172826

1 reference