Steady progress and recent breakthroughs in the accuracy of automated genome annotation (Q34726829)

4 August 2017

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title

Steady progress and recent breakthroughs in the accuracy of automated genome annotation (English)

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4 August 2017

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Michael R Brent

1

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4 August 2017

publication date

1 January 2008

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4 August 2017

published in

Nature Reviews Genetics

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4 August 2017

volume

9

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4 August 2017

issue

1

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4 August 2017

page(s)

62-73

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The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)

4 August 2017

cites work

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Global discriminative learning for higher-accuracy computational gene prediction

31 March 2020

1 reference

Conrad: gene prediction using conditional random fields.

31 March 2020

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

31 March 2020

1 reference

What is a gene, post-ENCODE? History and updated definition

31 March 2020

1 reference

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

31 March 2020

1 reference

Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method

31 March 2020

1 reference

Statistical analysis of the 5' untranslated region of human mRNA using "Oligo-Capped" cDNA libraries

31 March 2020

1 reference

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

31 March 2020

1 reference

Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes

31 March 2020

1 reference

Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing

31 March 2020

1 reference

Gene finding in the chicken genome

31 March 2020

1 reference

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

31 March 2020

1 reference

Targeted discovery of novel human exons by comparative genomics

31 March 2020

1 reference

BLAT—The BLAST-Like Alignment Tool

31 March 2020

1 reference

Automated generation of heuristics for biological sequence comparison

31 March 2020

1 reference

31 March 2020

GeneWise and Genomewise

1 reference

31 March 2020

An overview of Ensembl

1 reference

Gene structure conservation aids similarity based gene prediction

31 March 2020

1 reference

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

31 March 2020

1 reference

How does eukaryotic gene prediction work?

31 March 2020

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Prediction of complete gene structures in human genomic DNA

31 March 2020

1 reference

Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences

31 March 2020

1 reference

Interpolated Markov models for eukaryotic gene finding.

31 March 2020

1 reference

Sequencing and comparison of yeast species to identify genes and regulatory elements

31 March 2020

1 reference

Initial sequencing and comparative analysis of the mouse genome

31 March 2020

1 reference

Integrating genomic homology into gene structure prediction

31 March 2020

1 reference

Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts

31 March 2020

1 reference

Comparative gene prediction in human and mouse

31 March 2020

1 reference

31 March 2020

1 reference

Human–Mouse Gene Identification by Comparative Evidence Integration and Evolutionary Analysis

31 March 2020

1 reference

Evolution of genes and genomes on the Drosophila phylogeny

31 March 2020

1 reference

Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.

31 March 2020

1 reference

Using multiple alignments to improve gene prediction

31 March 2020

1 reference

CONTRAfold: RNA secondary structure prediction without physics-based models

31 March 2020

1 reference

Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions

31 March 2020

1 reference

Using ESTs to improve the accuracy of de novo gene prediction

31 March 2020

1 reference

Ab initio gene finding in Drosophila genomic DNA

31 March 2020

1 reference

Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome

31 March 2020

1 reference

Computational gene prediction using multiple sources of evidence

31 March 2020

1 reference

Iterative gene prediction and pseudogene removal improves genome annotation

31 March 2020

1 reference

A genome-wide survey of human pseudogenes

31 March 2020

1 reference

Large-scale analysis of pseudogenes in the human genome

31 March 2020

1 reference

GENCODE: producing a reference annotation for ENCODE

31 March 2020

1 reference

Pairagon N-SCAN_EST: a model-based gene annotation pipeline

31 March 2020

1 reference

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

31 March 2020

1 reference

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome

31 March 2020

1 reference

GAZE: a generic framework for the integration of gene-prediction data by dynamic programming

31 March 2020

1 reference

Creating a honey bee consensus gene set

31 March 2020

1 reference

JIGSAW: integration of multiple sources of evidence for gene prediction

31 March 2020

1 reference

Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure

31 March 2020

1 reference

EGASP: the human ENCODE Genome Annotation Assessment Project

31 March 2020

1 reference

Genome annotation past, present, and future: how to define an ORF at each locus

31 March 2020

1 reference

What are DNA sequence motifs?

31 March 2020

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Gene prediction with a hidden Markov model and a new intron submodel

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NRG2220

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Dimensions Publication ID

4 August 2017

1024354176

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