Evolutionary, physicochemical, and functional mechanisms of protein homooligomerization (Q34714911)

4 August 2017

title

Evolutionary, physicochemical, and functional mechanisms of protein homooligomerization (English)

1 reference

4 August 2017

4

Anna R Panchenko

1 reference

4 August 2017

Hafumi Nishi

1

1 reference

4 August 2017

Kosuke Hashimoto

series ordinal

2

1 reference

4 August 2017

Thomas Madej

series ordinal

3

1 reference

4 August 2017

publication date

1 January 2013

1 reference

4 August 2017

number of pages

22

1 reference

Progress in Molecular Biology and Translational Science

inferred from page(s)

published in

1 reference

4 August 2017

volume

117

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4 August 2017

page(s)

3-24

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Analysis of domain-swapped oligomers reveals local sequence preferences and structural imprints at the linker regions and swapped interfaces

4 August 2017

cites work

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7 July 2018

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Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization

7 July 2018

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Structural Insights into Functional and Pathological Amyloid

7 July 2018

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Toward a Molecular Theory of Early and Late Events in Monomer to Amyloid Fibril Formation

7 July 2018

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Hinge-loop mutation can be used to control 3D domain swapping and amyloidogenesis of human cystatin C

7 July 2018

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Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

7 July 2018

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Amyloid fibril protein nomenclature: 2010 recommendations from the nomenclature committee of the International Society of Amyloidosis

7 July 2018

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Divergent molecular effects of desmin mutations on protein assembly in myofibrillar myopathy

7 July 2018

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Functional states of homooligomers: insights from the evolution of glycosyltransferases

7 July 2018

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Comparative evolutionary analysis of protein complexes in E. coli and yeast

7 July 2018

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The tyrosine kinase Csk dimerizes through Its SH3 domain

7 July 2018

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Evolution of protein binding modes in homooligomers

7 July 2018

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Structural evolution of p53, p63, and p73: Implication for heterotetramer formation

7 July 2018

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Mechanism of amyloidogenesis: nucleation-dependent fibrillation versus double-concerted fibrillation

7 July 2018

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Functional amyloids as natural storage of peptide hormones in pituitary secretory granules

7 July 2018

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Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis

7 July 2018

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The role of quaternary structure in (beta/alpha)(8)-barrel proteins: evolutionary happenstance or a higher level of structure-function relationships?

7 July 2018

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Protein acrobatics in pairs--dimerization via domain swapping

7 July 2018

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A periodic table of coiled-coil protein structures.

7 July 2018

1 reference

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Competition between LIM-binding domains

7 July 2018

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Emergence of symmetry in homooligomeric biological assemblies.

7 July 2018

1 reference

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Built-in loops allow versatility in domain-domain interactions: lessons from self-interacting domains

7 July 2018

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Systematic analysis of nucleation-dependent polymerization reveals new insights into the mechanism of amyloid self-assembly

7 July 2018

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Amyloid-beta protein dimers isolated directly from Alzheimer's brains impair synaptic plasticity and memory

7 July 2018

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Assembly reflects evolution of protein complexes

7 July 2018

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7 July 2018

Amyloids: friend or foe?

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Regulation of Escherichia coli SOS mutagenesis by dimeric intrinsically disordered umuD gene products.

7 July 2018

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Designed protein-protein association

7 July 2018

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Inference of macromolecular assemblies from crystalline state

7 July 2018

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Protein subunit interfaces: heterodimers versus homodimers

7 July 2018

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Evolution of protein complexes by duplication of homomeric interactions

7 July 2018

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So how do you know you have a macromolecular complex?

7 July 2018

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7 July 2018

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A seven-helix coiled coil

7 July 2018

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Curli biogenesis and function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

NOXclass: prediction of protein-protein interaction types

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Finding biologically relevant protein domain interactions: conserved binding mode analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

The importance of sequence diversity in the aggregation and evolution of proteins

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Protein oligomerization: how and why.

7 July 2018

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Binding properties and evolution of homodimers in protein-protein interaction networks

7 July 2018

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Allosteric mechanisms of signal transduction

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

A mutation in the dimerization domain of filamin c causes a novel type of autosomal dominant myofibrillar myopathy.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Pyruvate kinase type M2 and its role in tumor growth and spreading

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Novel specificities emerge by stepwise duplication of functional modules.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Structure of the thermolabile mutant aldolase B, A149P: molecular basis of hereditary fructose intolerance

7 July 2018

1 reference

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Domain swapping is a consequence of minimal frustration

7 July 2018

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Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

7 July 2018

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Coiled coil domains: stability, specificity, and biological implications

7 July 2018

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LIM-domain-binding protein 1: a multifunctional cofactor that interacts with diverse proteins.

7 July 2018

1 reference

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Role of cysteine amino acid residues on the RNA binding activity of human thymidylate synthase

7 July 2018

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The dimeric versus monomeric status of 14-3-3zeta is controlled by phosphorylation of Ser58 at the dimer interface

7 July 2018

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Proprotein convertase cleavage liberates a fibrillogenic fragment of a resident glycoprotein to initiate melanosome biogenesis

7 July 2018

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Analysing six types of protein-protein interfaces

7 July 2018

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Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism

7 July 2018

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3D domain swapping: as domains continue to swap

7 July 2018

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Mechanism of glutamate receptor desensitization

7 July 2018

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The domain-swapped dimer of cyanovirin-N is in a metastable folded state: reconciliation of X-ray and NMR structures

7 July 2018

1 reference

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Phosphorylation and dimerization regulate nucleocytoplasmic shuttling of mammalian STE20-like kinase (MST)

7 July 2018

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Three-dimensional domain swapping in p13suc1 occurs in the unfolded state and is controlled by conserved proline residues.

7 July 2018

1 reference

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A domain-swapped RNase A dimer with implications for amyloid formation

7 July 2018

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Coiled coils: a highly versatile protein folding motif

7 July 2018

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Structural symmetry and protein function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

High-level neuronal expression of abeta 1-42 in wild-type human amyloid protein precursor transgenic mice: synaptotoxicity without plaque formation

7 July 2018

1 reference

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Protein misfolding, evolution and disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

p73 and p63 are homotetramers capable of weak heterotypic interactions with each other but not with p53

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Physical evidence for a phosphorylation-dependent conformational change in the enhancer-binding protein NtrC.

7 July 2018

1 reference

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Anatomy of hot spots in protein interfaces

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Carbon source-dependent phosphorylation of hexokinase PII and its role in the glucose-signaling response in yeast.

7 July 2018

1 reference

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Mechanism and evolution of protein dimerization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Creation of a biologically active interleukin-5 monomer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Phosphorylation of tyrosine 537 on the human estrogen receptor is required for binding to an estrogen response element

7 July 2018

1 reference

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A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

7 July 2018

1 reference

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Domain swapping: entangling alliances between proteins

7 July 2018

1 reference

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Crystal structure of an isoleucine-zipper trimer

7 July 2018

1 reference

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Protein-protein interactions: a review of protein dimer structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

A hot spot of binding energy in a hormone-receptor interface

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Evidence that the leucine zipper is a coiled coil

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Pyruvate kinase type M2 is phosphorylated at tyrosine residues in cells transformed by Rous sarcoma virus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

A Simple Definition of Structural Regions in Proteins and Its Use in Analyzing Interface Evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Thermophilic adaptation of protein complexes inferred from proteomic homology modeling.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Self-assembly and evolution of homomeric protein complexes.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Mechanism and energy landscape of domain swapping in the B1 domain of protein G.

26 October 2018

1 reference

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Regulation of the Rad53 protein kinase in signal amplification by oligomer assembly and disassembly.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Structural bases of feed-back control of arginine biosynthesis, revealed by the structures of two hexameric N-acetylglutamate kinases, from Thermotoga maritima and Pseudomonas aeruginosa

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Dissecting subunit interfaces in homodimeric proteins

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

Structural characterisation and functional significance of transient protein-protein interactions

26 October 2018

1 reference

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Design and folding of dimeric proteins

26 October 2018

1 reference

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Discriminating between homodimeric and monomeric proteins in the crystalline state

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

PQS: a protein quaternary structure file server

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3786560

LIM Domain Binding Proteins 1 and 2 Have Different Oligomeric States

26 October 2018

1 reference

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Dissecting protein-protein recognition sites

9 December 2018

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12 December 2020

The Quaternary Structure of Proteins Composed of Identical Subunits

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12 December 2020

The subunit interfaces of weakly associated homodimeric proteins

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On the aggregation of bovine pancreatic ribonuclease

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10.1016/B978-0-12-386931-9.00001-5

Identifiers

DOI

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4 August 2017

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