Multiplexing Genetic and Nucleosome Positioning Codes: A Computational Approach (Q34677500)

27272176

3 August 2017

title

Multiplexing Genetic and Nucleosome Positioning Codes: A Computational Approach (English)

1 reference

3 August 2017

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27272176 AND SRC:MED&resulttype=core&format=json

8 June 2020

author name string

Behrouz Eslami-Mossallam

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27272176 AND SRC:MED&resulttype=core&format=json

8 June 2020

Raoul D Schram

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27272176 AND SRC:MED&resulttype=core&format=json

8 June 2020

John van Noort

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27272176 AND SRC:MED&resulttype=core&format=json

8 June 2020

Helmut Schiessel

5

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8 June 2020

language of work or name

English

0 references

publication date

7 June 2016

1 reference

3 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27272176 AND SRC:MED&resulttype=core&format=json

8 June 2020

volume

11

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issue

6

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8 June 2020

page(s)

e0156905

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Creative Commons Attribution 4.0 International

8 June 2020

copyright license

start time

7 June 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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1 reference

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Nucleosome positioning: resources and tools online

7 July 2018

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Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding

7 July 2018

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Increasing Nucleosome Occupancy Is Correlated with an Increasing Mutation Rate so Long as DNA Repair Machinery Is Intact

7 July 2018

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Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility

7 July 2018

1 reference

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In vitro selection of DNAs with an increased propensity to form small circles

7 July 2018

1 reference

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Three-dimensional eukaryotic genomic organization is strongly correlated with codon usage expression and function

7 July 2018

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Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning

7 July 2018

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Archaeal nucleosome positioning in vivo and in vitro is directed by primary sequence motifs

7 July 2018

1 reference

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Determinants of nucleosome positioning

7 July 2018

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A map of nucleosome positions in yeast at base-pair resolution

7 July 2018

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Nucleosome stability dramatically impacts the targeting of somatic hypermutation

7 July 2018

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Human nucleosomes: special role of CG dinucleotides and Alu-nucleosomes

7 July 2018

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Using DNA mechanics to predict in vitro nucleosome positions and formation energies.

7 July 2018

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The DNA-encoded nucleosome organization of a eukaryotic genome

7 July 2018

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A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning

7 July 2018

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The genetic code is nearly optimal for allowing additional information within protein-coding sequences

7 July 2018

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Indirect readout: detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials.

7 July 2018

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A genomic code for nucleosome positioning

7 July 2018

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DNA Basepair Step Deformability Inferred from Molecular Dynamics Simulations

7 July 2018

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Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

7 July 2018

1 reference

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DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

7 July 2018

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Crystal structure of the nucleosome core particle at 2.8 Å resolution

7 July 2018

1 reference

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The pitch of chromatin DNA is reflected in its nucleotide sequence

7 July 2018

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A base-centred explanation of the B-to-A transition in DNA.

7 July 2018

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Sequence periodicities in chicken nucleosome core DNA.

7 July 2018

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The multiple codes of nucleotide sequences

7 July 2018

1 reference

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DNA nanomechanics in the nucleosome

7 July 2018

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Rigid-body molecular dynamics of DNA inside a nucleosome

21 January 2018

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DNA shape dominates sequence affinity in nucleosome formation.

21 January 2018

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A comparative evaluation on prediction methods of nucleosome positioning

21 January 2018

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High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

21 January 2018

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Dynamics of DNA Supercoils

21 January 2018

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Experiments confirm the influence of genome long-range correlations on nucleosome positioning

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27272176

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27272176

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0156905

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27272176 AND SRC:MED&resulttype=core&format=json

8 June 2020

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release_wmxuxcpfwrdl7bnzcuybiaykju

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/wmxuxcpfwrdl7bnzcuybiaykju

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27272176 AND SRC:MED&resulttype=core&format=json

8 June 2020

27272176

1 reference