Coupling of downstream RNA polymerase-promoter interactions with formation of catalytically competent transcription initiation complex (Q34646869)

3 August 2017

title

Coupling of downstream RNA polymerase-promoter interactions with formation of catalytically competent transcription initiation complex (English)

1 reference

3 August 2017

Vladimir Mekler

1

1 reference

3 August 2017

Leonid Minakhin

2

1 reference

3 August 2017

Sergei Borukhov

3

1 reference

3 August 2017

Arkady Mustaev

4

1 reference

3 August 2017

Konstantin Severinov

5

1 reference

3 August 2017

language of work or name

English

0 references

publication date

13 October 2014

1 reference

Journal of Molecular Biology

3 August 2017

published in

1 reference

3 August 2017

volume

426

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3 August 2017

issue

24

1 reference

3 August 2017

page(s)

3973-3984

1 reference

Phage T7 Gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of 70 domain 1.1

3 August 2017

cites work

1 reference

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7 July 2018

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The Mechanism of E. coli RNA Polymerase Regulation by ppGpp Is Suggested by the Structure of their Complex

7 July 2018

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7 July 2018

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X-ray Crystal Structure of Escherichia coli RNA Polymerase 70 Holoenzyme

7 July 2018

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7 July 2018

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Direct interactions between the coiled-coil tip of DksA and the trigger loop of RNA polymerase mediate transcriptional regulation

7 July 2018

1 reference

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7 July 2018

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7 July 2018

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RNA polymerase-promoter interactions determining different stability of the Escherichia coli and Thermus aquaticus transcription initiation complexes.

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Structural and Mechanistic Basis for the Inhibition of Escherichia coli RNA Polymerase by T7 Gp2

7 July 2018

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7 July 2018

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7 July 2018

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A Critical Role of Downstream RNA Polymerase-Promoter Interactions in the Formation of Initiation Complex

7 July 2018

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7 July 2018

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Mechanism of Bacterial Transcription Initiation: RNA Polymerase - Promoter Binding, Isomerization to Initiation-Competent Open Complexes, and Initiation of RNA Synthesis

7 July 2018

1 reference

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Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

7 July 2018

1 reference

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Interaction of Escherichia coli RNA Polymerase σ70 Subunit with Promoter Elements in the Context of Free σ70, RNA Polymerase Holoenzyme, and the β′-σ70 Complex

7 July 2018

1 reference

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Multiple roles of the RNA polymerase {beta}' SW2 region in transcription initiation, promoter escape, and RNA elongation

7 July 2018

1 reference

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T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site

7 July 2018

1 reference

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Allosteric control of Escherichia coli rRNA promoter complexes by DksA.

7 July 2018

1 reference

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The promoter spacer influences transcription initiation via sigma70 region 1.1 of Escherichia coli RNA polymerase

7 July 2018

1 reference

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The RNA polymerase "switch region" is a target for inhibitors

7 July 2018

1 reference

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Advances in bacterial promoter recognition and its control by factors that do not bind DNA.

7 July 2018

1 reference

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RNA polymerase: the vehicle of transcription

7 July 2018

1 reference

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Structural basis for transcription elongation by bacterial RNA polymerase

7 July 2018

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Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space

7 July 2018

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A single-stranded promoter for RNA polymerase III.

7 July 2018

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Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

7 July 2018

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7 July 2018

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7 July 2018

1 reference

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RNA polymerase clamps down

7 July 2018

1 reference

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Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

7 July 2018

1 reference

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Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

7 July 2018

1 reference

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The G C-rich discriminator region of the tyrT promoter antagonises the formation of stable preinitiation complexes

7 July 2018

1 reference

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Promoter opening via a DNA fork junction binding activity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258483

Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258483

Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258483

Topology of the RNA polymerase active center probed by chimeric rifampicin-nucleotide compounds

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258483

rRNA promoter regulation by nonoptimal binding of sigma region 1.2: an additional recognition element for RNA polymerase.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258483

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function.

26 October 2018

1 reference

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Functional determinants of transcription factors in Escherichia coli: protein families and binding sites

26 October 2018

1 reference

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Domain 1.1 of the sigma(70) subunit of Escherichia coli RNA polymerase modulates the formation of stable polymerase/promoter complexes

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258483

Transcription processivity: protein-DNA interactions holding together the elongation complex.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258483

Effects of Discontinuities in the DNA Template on Abortive Initiation and Promoter Escape byEscherichia coliRNA Polymerase

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258483

Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during Transcription

9 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258483

DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25311862

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The downstream DNA jaw of bacterial RNA polymerase facilitates both transcriptional initiation and pausing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25311862

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Co-overexpression of Escherichia coli RNA polymerase subunits allows isolation and analysis of mutant enzymes lacking lineage-specific sequence insertions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25311862

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JMB.2014.10.005

1 reference

3 August 2017

1 reference

3 August 2017

1 reference