Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA (Q34600135)

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18 January 2020

title

Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA (English)

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18 January 2020

1

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18 January 2020

Vivek Mutalik

series ordinal

3

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18 January 2020

4

Carol A Gross

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18 January 2020

author name string

Naum J Phleger

series ordinal

2

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18 January 2020

language of work or name

English

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publication date

27 March 2006

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Proceedings of the National Academy of Sciences of the United States of America

18 January 2020

published in

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18 January 2020

volume

103

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18 January 2020

issue

14

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18 January 2020

page(s)

5332-5337

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Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

18 January 2020

cites work

1 reference

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Holoenzyme switching and stochastic release of sigma factors from RNA polymerase in vivo

7 July 2018

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Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition?

7 July 2018

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RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

7 July 2018

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Physiological studies of Escherichia coli strain MG1655: growth defects and apparent cross-regulation of gene expression

7 July 2018

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Crystal structure of Escherichia coli sigmaE with the cytoplasmic domain of its anti-sigma RseA

7 July 2018

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Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

7 July 2018

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Regulation of sigma factor competition by the alarmone ppGpp

7 July 2018

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Cytoplasmic RNA Polymerase in Escherichia coli

7 July 2018

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Functional modulation of Escherichia coli RNA polymerase

7 July 2018

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Two extracytoplasmic function sigma subunits, sigma(E) and sigma(FecI), of Escherichia coli: promoter selectivity and intracellular levels

7 July 2018

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Direct localization of a beta-subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase

7 July 2018

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The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized

7 July 2018

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The functional and regulatory roles of sigma factors in transcription

7 July 2018

1 reference

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Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D.

7 July 2018

1 reference

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Negative regulation by RpoS: a case of sigma factor competition

7 July 2018

1 reference

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RNA Polymerase-Promoter Interactions: the Comings and Goings of RNA Polymerase

7 July 2018

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Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions

7 July 2018

1 reference

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A cycle of binding and release of the DnaK, DnaJ and GrpE chaperones regulates activity of the Escherichia coli heat shock transcription factor sigma32.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459355

Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of sigma 70 and sigma 38

7 July 2018

1 reference

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Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects

7 July 2018

1 reference

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Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps

7 July 2018

1 reference

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Mechanism and control of transcription initiation in prokaryotes

7 July 2018

1 reference

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Heat shock protein GroE of Escherichia coli: key protective roles against thermal stress

7 July 2018

1 reference

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A mutant sigma 32 with a small deletion in conserved region 3 of sigma has reduced affinity for core RNA polymerase

7 July 2018

1 reference

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How a mutation in the gene encoding sigma 70 suppresses the defective heat shock response caused by a mutation in the gene encoding sigma 32.

7 July 2018

1 reference

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Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: Measurement of DNA-bound Escherichia coli lac repressor in vivo

7 July 2018

1 reference

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Biosynthesis of RNA polymerase in Escherichia coli. IX. Growth-dependent variations in the synthesis rate, content and distribution of RNA polymerase

7 July 2018

1 reference

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Patterns of protein synthesis in E. coli: a catalog of the amount of 140 individual proteins at different growth rates

7 July 2018

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Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: differences in the binding behavior of core and holoenzyme

7 July 2018

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Assay of Escherichia coli RNA polymerase: sigma-core interactions

7 July 2018

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The role of the alarmone (p)ppGpp in sigma N competition for core RNA polymerase.

26 October 2018

1 reference

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A coiled-coil from the RNA polymerase beta' subunit allosterically induces selective nontemplate strand binding by sigma(70).

26 October 2018

1 reference

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Inhibition of transcription initiation by lac repressor.

26 October 2018

1 reference

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Sequential biosynthesis of the and ' subunits of the DNA-dependent RNA polymerase from Escherichia coli

26 October 2018

1 reference

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Synthesis of RNA lolymerase in Escherichia coli growing at different rates

26 October 2018

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12 December 2020

Biosynthesis of the β and β′ subunits of RNA polymerase in Escherichia coli

1 reference

12 December 2020

Biosynthesis of RNA polymerase in Escherichia coli

1 reference

12 December 2020

Evidence for a positive regulation of RNA polymerase synthesis in Escherichia coli

1 reference

12 December 2020

Biosynthesis of RNA polymerase in Escherichia coli. II. control of RNA polymerase synthesis during nutritional shift up and down

1 reference

12 December 2020

Altering the level and regulation of the major sigma subunit of RNA polymerase affects gene expression and development in Bacillus subtilis

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0600828103

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18 January 2020

0 references

1 reference

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18 January 2020

PubMed publication ID

16567622

1 reference